View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_low_3 (Length: 563)
Name: NF20555_low_3
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 49892234 - 49891956
Alignment:
| Q |
16 |
gaaactacttcaactagttcggttattaagagggaatataatattgatgagaattgtgataagggtggtgtaaatagcaatgttgattataaacatagtc |
115 |
Q |
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| T |
49892234 |
gaaactacttcaactagttcggttattaagagggaatataatattgatgagaattgtgataagggtggtgtaaatagcaatgttgattataaacatagtc |
49892135 |
T |
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| Q |
116 |
cttctaatatgatgaagtttgctgatatgccattattcactccaacttcacatgatttctttagctcctcatcatcacgaccagtgtataaattttctga |
215 |
Q |
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| T |
49892134 |
cttctaatatgatgaagtttgctgatatgccattattcactccaacttcacatgatttcttttgctctccatcatcacgaccagtgtataaattttctga |
49892035 |
T |
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| Q |
216 |
ttctccatatgggattttgggaagtttgatatctccttctggaatgtgattcatccaagatctacctgaatattaattc |
294 |
Q |
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| T |
49892034 |
ttctccatatgggattttgggaagtttgatatctccttctggattgggattcatccaagatctacctgaatattaattc |
49891956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 319 - 538
Target Start/End: Complemental strand, 49891959 - 49891740
Alignment:
| Q |
319 |
attcattcatcaactaataggtgcatgttgtgtgctatattaggctggtctcttatttgttaattaatttgttgcatatttannnnnnngtaaagtttgt |
418 |
Q |
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| T |
49891959 |
attcattcatcaactaataggtgcaagttgtgtgctatattaggctggtctcttatttgttaattaatttgttgcatatttatttttttgtaaagtttgt |
49891860 |
T |
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| Q |
419 |
tgtattgtggacataagaaattgacatgaattactaggagatttaattcattctttctagacataagaattagcaaaagattattcatttggctttaatt |
518 |
Q |
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| T |
49891859 |
tgtattgtggacataagaaattgacatgaattactaggagatttaattcattctttctagacataagaattagcaaaagattattcatttggctttaatt |
49891760 |
T |
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| Q |
519 |
tgttacactaatttcattca |
538 |
Q |
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| T |
49891759 |
tgttacactaatttcattca |
49891740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 5527631 - 5527701
Alignment:
| Q |
84 |
tgtaaatagcaatgttgattataaacatagtccttctaatatgatgaagtttgctgatatgccattattca |
154 |
Q |
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| T |
5527631 |
tgtaaataacaatgttgatgataaacataatctttctagtctgatgaagtttgctgatatgctattattca |
5527701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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