View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_low_30 (Length: 208)
Name: NF20555_low_30
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 2320333 - 2320160
Alignment:
| Q |
21 |
acagtgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatgggga |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2320333 |
acagtgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatgggga |
2320234 |
T |
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| Q |
121 |
tgtgtagaggtccgggagggaggggtacggtggttgtgaagaaggagaggatggctctgataaggaagatgatg |
194 |
Q |
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| T |
2320233 |
tgtgtagagggccgggagggaggggtacggtggttgtgaagaaggagaggatggctctgataaggaagatgatg |
2320160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 2293013 - 2292840
Alignment:
| Q |
21 |
acagtgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatgggga |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2293013 |
acagtgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatgggga |
2292914 |
T |
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| Q |
121 |
tgtgtagaggtccgggagggaggggtacggtggttgtgaagaaggagaggatggctctgataaggaagatgatg |
194 |
Q |
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| T |
2292913 |
tgtgtagagggccgggagggaggggtatggtggttgtgaataaggagaggatggctctgataaggaagatgatg |
2292840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 2309340 - 2309171
Alignment:
| Q |
25 |
tgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatgtg |
124 |
Q |
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| T |
2309340 |
tgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatgtg |
2309241 |
T |
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| Q |
125 |
tagaggtccgggagggaggggtacggtggttgtgaagaaggagaggatggctctgataaggaagatgatg |
194 |
Q |
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| T |
2309240 |
tagagggccgggagggaggggtacagtggttgtgaagaaggagagcatggctctgataaggaagatgatg |
2309171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 2326183 - 2326014
Alignment:
| Q |
25 |
tgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatgtg |
124 |
Q |
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| T |
2326183 |
tgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggaaaatgattttcggagccattgtatgcttgtgatgatggggatgtg |
2326084 |
T |
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| Q |
125 |
tagaggtccgggagggaggggtacggtggttgtgaagaaggagaggatggctctgataaggaagatgatg |
194 |
Q |
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| | || | |||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||||||| |
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| T |
2326083 |
tggtgggctgggagggaggggtacggtggttgtgaaggaggagagaatggctttgacgaggaagatgatg |
2326014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 2302630 - 2302459
Alignment:
| Q |
23 |
agtgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||| || | |||||||| |||||||||| |
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| T |
2302630 |
agtgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggaggatggttttcggagcaactgaatgtttgtgaggatggggatg |
2302531 |
T |
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| Q |
123 |
tgtagaggtccgggagggaggggtacggtggttgtgaagaaggagaggatggctctgataaggaagatgatg |
194 |
Q |
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||| |||| || ||||||| ||||||||||||||||||| ||| || ||| ||| ||| |||||||||||| |
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| T |
2302530 |
tgtggagggccaggagggaagggtacggtggttgtgaaggaggcaagaatgactccgatgaggaagatgatg |
2302459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 2329898 - 2329808
Alignment:
| Q |
25 |
tgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgat |
115 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||| |||| || ||||||| | ||| |||||| | |||||||||| |
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| T |
2329898 |
tgatgataggaccatgtttggcatgaagagttctgagaaaaggttcaagctgggcgaatgattttcgaagccattggatgcttgtgatgat |
2329808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 2350200 - 2350068
Alignment:
| Q |
23 |
agtgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatg |
122 |
Q |
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||||||||||||||||| ||||| ||||| ||||||| ||||||||| |||||||| ||||||| ||||| || ||| ||||||| |||||||| |
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| T |
2350200 |
agtgatgataggaccatatttggtgtggagggttttgataaaaggttcgagttgggacgatgattttcggagccataggatacttgtgataatggggata |
2350101 |
T |
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| Q |
123 |
tgtagaggtccgggagggaggggtacggtggtt |
155 |
Q |
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|| | || ||||||||||||| | |||||||| |
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| T |
2350100 |
tgcggtggaccgggagggagggttgcggtggtt |
2350068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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