View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_low_4 (Length: 527)
Name: NF20555_low_4
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 130 - 512
Target Start/End: Original strand, 40747304 - 40747689
Alignment:
| Q |
130 |
atctcaaagccagtccagagataatagtattgtttaaaagaggtgaaaacttaattagggaggcttacattgatattgattatgcaggttcaacgagaga |
229 |
Q |
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| T |
40747304 |
atctcaaagccagtccagagagaatagtattgtttaaaagaggtggaaacttaattagggaggcttacattgatgttgattatgcaggttcaacgagata |
40747403 |
T |
|
| Q |
230 |
taaaggatttacttcaggatattgtaccttcttgtgtgaaaaaattgttgcttagtggagtaggaagctaagtgtaataggtcgatctagggctaaagca |
329 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
40747404 |
taaaggatttactttaggatattgtaccttcttgtgtgaaaaaattgttgcttagtggagtaggaagcaaagtgtaataggtcgatctagggctaaagta |
40747503 |
T |
|
| Q |
330 |
gaatttagagctaagggacaagga---atttgtgaactattatggatgaaaaaagtgacagaagatttgatgatataatgtgaaggctctatgaaattct |
426 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
40747504 |
gaatttagagctatgggacaaggaaatatttgtgaactattatggatgaaaaaaatgacagaaaatttgatgatataatgtgaaggctctatgaaattgt |
40747603 |
T |
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| Q |
427 |
tttgtgacaataattcggctattagtattgcatacaatctttttcaacatgacatgacaaaactcattaagattgactgacatttc |
512 |
Q |
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| T |
40747604 |
tttgtaacaataaatcggctattagtattgcatacaatctttttcaacatgacatgacaaaactcattaagattgaccgacatttc |
40747689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 40746987 - 40747109
Alignment:
| Q |
8 |
tgagatgaaggatctcaaggaactcaagtatttcttggaaattattgagataaactactcaaaacaatgcttttctatctcttagagaaattatgtgttt |
107 |
Q |
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| T |
40746987 |
tgagatgaaggatctcgaggaactcaagtatttcttggaaattattgagataaactactcaaaacaatgcttttctatctcttagagaaattatgtgttt |
40747086 |
T |
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| Q |
108 |
aatcgtttgcaggaaataggaaa |
130 |
Q |
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| T |
40747087 |
aatcgtttgcaggaaataggaaa |
40747109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 386 - 494
Target Start/End: Complemental strand, 12543427 - 12543323
Alignment:
| Q |
386 |
agaagatttgatgatataatgtgaaggctctatgaaattcttttgtgacaataattcggctattagtattgcatacaatctttttcaacatgacatgaca |
485 |
Q |
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| T |
12543427 |
agaagatttgaagttacaatgtgaaggccttatgaaattatt--gtgacaataattcggccattagtattgcacataatc--cttcagcatgacatgaca |
12543332 |
T |
|
| Q |
486 |
aaactcatt |
494 |
Q |
| |
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|||| |||| |
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| T |
12543331 |
aaacacatt |
12543323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 439
Target Start/End: Complemental strand, 27906340 - 27906260
Alignment:
| Q |
359 |
tgaactattatggatgaaaaaagtgacagaagatttgatgatataatgtgaaggctctatgaaattcttttgtgacaataa |
439 |
Q |
| |
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| T |
27906340 |
tgaactattgtggatgaaactagtactagaagatttgaagatacgatgtgaaggctctatgaagttgttttttgacaataa |
27906260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 32834842 - 32834781
Alignment:
| Q |
349 |
aaggaatttgtgaactattatggatgaaaaaagtgacagaagatttgatgatataatgtgaa |
410 |
Q |
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| T |
32834842 |
aaggaatgtgtgaactattttggatgaaataagtgctagaatattttaagatataatgtgaa |
32834781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 494
Target Start/End: Original strand, 7707665 - 7707743
Alignment:
| Q |
416 |
tatgaaattcttttgtgacaataattcggctattagtattgcatacaatctttttcaacatgacatgacaaaactcatt |
494 |
Q |
| |
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|||||| || ||||||| |||||| ||||| ||||||||||| || |||||| |||| ||||||| |||||||| |||| |
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| T |
7707665 |
tatgaagttgttttgtggcaataaatcggccattagtattgcttaaaatcttgttcagcatgacaagacaaaacacatt |
7707743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 378
Target Start/End: Original strand, 29402537 - 29402641
Alignment:
| Q |
274 |
ttgttgcttagtggagtaggaagctaagtgtaataggtcgatctagggctaaagcagaatttagagctaagggacaaggaatttgtgaactattatggat |
373 |
Q |
| |
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||||||||| | |||||| ||||| ||||||| ||| |||||| || | | ||||||||||||| | || ||||||||||||||| |||||||||| |
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| T |
29402537 |
ttgttgcttggaggagtaagaagcaaagtgtagtagttcgatcaagcattgaggcagaatttagagaaatggcacaaggaatttgtgagctattatggac |
29402636 |
T |
|
| Q |
374 |
gaaaa |
378 |
Q |
| |
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||||| |
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| T |
29402637 |
gaaaa |
29402641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 419
Target Start/End: Original strand, 30996433 - 30996663
Alignment:
| Q |
189 |
gaggcttacattgatattgattatgcaggttcaacgagagataaaggatttacttcaggatattgtaccttcttgtgtgaaaaaattgttgcttagtgga |
288 |
Q |
| |
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|||||||||| | || |||||||| ||||||||| ||| |||||| ||| ||||| || |||||||| ||||||||| || ||||||||| | ||| |
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| T |
30996433 |
gaggcttacactaatgttgattatacaggttcaatgagtgataaaagatctacttgagaatattgtattttcttgtgtagcaaccttgttgctttgagga |
30996532 |
T |
|
| Q |
289 |
gtaggaagctaagtgtaataggtcgatctagggctaaagcagaatttagagctaagggacaaggaatttgtgaactattatggatgaaaaaagtgacaga |
388 |
Q |
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||| ||||| || ||| | | | ||| || | ||||| |||| ||| ||| | || |||||||||||||||||||| ||||||| || || ||| |
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| T |
30996533 |
gtaagaagcaaacagtagttgcccaatcaagaattgaagcaaaattcagatctatgacactaggaatttgtgaactattatagatgaaacaaatgctaga |
30996632 |
T |
|
| Q |
389 |
agatttgatgatataatgtgaaggctctatg |
419 |
Q |
| |
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|||||||| |||| || ||||||| ||||| |
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| T |
30996633 |
agatttgaagatacaacatgaaggccctatg |
30996663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 457
Target Start/End: Original strand, 14302530 - 14302634
Alignment:
| Q |
353 |
aatttgtgaactattatggatgaaaaaagtgacagaagatttgatgatataatgtgaaggctctatgaaattcttttgtgacaataattcggctattagt |
452 |
Q |
| |
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||||||||||||| | | ||||||| | || | |||| |||| | |||| ||||| ||||| | ||||| || |||||||||||||| ||| | |||||| |
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| T |
14302530 |
aatttgtgaactaatgtcgatgaaacatgtcatagaaaatttaaagatacaatgtaaaggcgcaatgaagttgttttgtgacaataaatcgaccattagt |
14302629 |
T |
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| Q |
453 |
attgc |
457 |
Q |
| |
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||||| |
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|
| T |
14302630 |
attgc |
14302634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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