View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_low_5 (Length: 526)
Name: NF20555_low_5
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 36 - 361
Target Start/End: Complemental strand, 8101057 - 8100740
Alignment:
| Q |
36 |
gagtgaaacgacaatgtaaataaaaggaaacgacgaccgtttaatgtccttgtcttggactaggtttaatatccttgtctataaaaggggtattattatt |
135 |
Q |
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| T |
8101057 |
gagtgaaacgacaatgtaaataaaaggaaacgacgaccgtttaatgtccttgtcttggactaggtttaatatccttgtctataaaaggggtattattatt |
8100958 |
T |
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| Q |
136 |
attctcattttttcagaaaaacataacattatttcttctcatctctctctacttgatatatcaacatgaagattacagtagtcttcgttttcatgctttg |
235 |
Q |
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| T |
8100957 |
---ctcattttttcagaaaaacataacattaattcttctcatctctctctacttgatatatcaacatgaagattacagtagtcttcgttttcatgctttg |
8100861 |
T |
|
| Q |
236 |
cagctttgccatttttatcacttgagcttcacatattcttgaagaagcaattcaattccaccaccaccgttttcagaaacatacgtggatcaagcttttg |
335 |
Q |
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| T |
8100860 |
cagctttgccatttttatcacttgagcttcacatattcttgaagaagca-----attccaccaccaccgttttcagaaacatacgtggatcaagcttttg |
8100766 |
T |
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| Q |
336 |
ctgagtggatgttgcttcaccaaaaa |
361 |
Q |
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| T |
8100765 |
ctgagtggatgttgctccaccaaaaa |
8100740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 110 - 361
Target Start/End: Original strand, 8099890 - 8100127
Alignment:
| Q |
110 |
ttgtctataaaaggggtattattattattctcattttttcagaaaaacataacattatttcttctcatctctctctacttgatatatcaacatgaagatt |
209 |
Q |
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| T |
8099890 |
ttgtctataaaaggggtattattattattc-cattttttcagaaaaacataacattaattcttctcatctctctctacttgatatatcaacatgaagatt |
8099988 |
T |
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| Q |
210 |
acagtagtcttcgttttcatgctttgcagctttgccatttttatcacttgagcttcacatattcttgaagaagcaattcaattccaccaccaccgttttc |
309 |
Q |
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| T |
8099989 |
acagtagtcttcgttttcat--------gctttgccatttttatcacttgagcttcacatattcttgaagaag-----caattccaccaccaccgttttc |
8100075 |
T |
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| Q |
310 |
agaaacatacgtggatcaagcttttgctgagtggatgttgcttcaccaaaaa |
361 |
Q |
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| T |
8100076 |
agaaacatacgtggatcaagcttttgctgagtggatgttgctccaccaaaaa |
8100127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 356 - 482
Target Start/End: Complemental strand, 8100695 - 8100569
Alignment:
| Q |
356 |
caaaaagaagttggagcatatccatgagtttaacaaaggttatatatatatgccaaattcatttannnnnnncacactttcttctcaatacagaaacata |
455 |
Q |
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| T |
8100695 |
caaaaagaagttggagcatatccatgagtttaacaaaggttatatatatatgtcaaattcatttatttttttcacactttcttctcaatacataaacata |
8100596 |
T |
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| Q |
456 |
ttgcttaaatttttattcacttatttt |
482 |
Q |
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| T |
8100595 |
ttgcttaaatttttattcacttatttt |
8100569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 356 - 464
Target Start/End: Complemental strand, 51988172 - 51988062
Alignment:
| Q |
356 |
caaaaagaagttggagcatatccatgagtttaacaaaggttatatat--atatgccaaattcatttannnnnnncacactttcttctcaatacagaaaca |
453 |
Q |
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| T |
51988172 |
caaaaagaagttggagcatatccatgagtttaacaaaggttatatatatatatgccaaattcatttatttttttcacactttcttctcaatacagaaaca |
51988073 |
T |
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| Q |
454 |
tattgcttaaa |
464 |
Q |
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||||||||||| |
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| T |
51988072 |
tattgcttaaa |
51988062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 466 - 513
Target Start/End: Complemental strand, 8100436 - 8100389
Alignment:
| Q |
466 |
ttttattcacttattttccttggtttttgattttcattgtgcttattg |
513 |
Q |
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| T |
8100436 |
ttttattcacttattttccttggtttttgattttcattgtgcttattg |
8100389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 8100172 - 8100210
Alignment:
| Q |
356 |
caaaaagaagttggagcatatccatgagtttaacaaagg |
394 |
Q |
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| T |
8100172 |
caaaaagaagttggagcatatccatgagtttaacaaagg |
8100210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 7532112 - 7532162
Alignment:
| Q |
356 |
caaaaagaagttggagcatatccatgagtttaacaaaggttatatatatat |
406 |
Q |
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| T |
7532112 |
caaaaagaagttggagcatatccatgagtttaacaaaggttatatatatat |
7532162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 396 - 464
Target Start/End: Original strand, 7532186 - 7532254
Alignment:
| Q |
396 |
tatatatatatgccaaattcatttannnnnnncacactttcttctcaatacagaaacatattgcttaaa |
464 |
Q |
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| T |
7532186 |
tatatatatatgccaaattcatttatttttttcacactttcttctcaatgcagaaacatattgcttaaa |
7532254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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