View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20556_high_1 (Length: 720)
Name: NF20556_high_1
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 323 - 710
Target Start/End: Complemental strand, 39516592 - 39516205
Alignment:
| Q |
323 |
tgtgggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39516592 |
tgtgggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcc |
39516493 |
T |
|
| Q |
423 |
taatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtgcagcggat |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39516492 |
taatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtgcagcagat |
39516393 |
T |
|
| Q |
523 |
tctgttttctctcagttgaaaatagatgatgctagatagattttcatgttttctcacaagtgtctcaagtaagtggaggagctgtttttattagatggct |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39516392 |
tctgttttctctcagttgaaaatagatgatgctagatagatattcatgttttctcacaagtgtctcaagtaagtggaggagctgtttttattagatggct |
39516293 |
T |
|
| Q |
623 |
cacttccctcttttgtccttgtttccttgtatttttcatacttagttatggttgttggtctattcttaatcgtaagactaatgatgat |
710 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39516292 |
cacttccctcttttgtccttgtttccttgtatttttcatacttggttatggttgttggtctattcttaattgtaagactaatgatgat |
39516205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 215 - 571
Target Start/End: Complemental strand, 39509632 - 39509276
Alignment:
| Q |
215 |
cttccatcaagggacaaattgatccaaactcacttagaaagtttagtgagacagtggagaaatgcttacaagatgatggttgtgataggccttcaatggg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39509632 |
cttccatcaagggacaaattgatccaaactcacttagaaagtttagtgagaaagtggaaaaatgcttacaagatgatggttgtgataggccttcaatggg |
39509533 |
T |
|
| Q |
315 |
tgatgtactgtgggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaatt |
414 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39509532 |
aaatgtaatgtgggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctaacagtgcttctgtatcaatt |
39509433 |
T |
|
| Q |
415 |
caattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtg |
514 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||||||||||||| |||||| | ||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
39509432 |
caattgcccaatgttcgccgtttaccttctctgaatacactgagtgaagtggatgatatgtctatgtctattttgagggttattgatgaatctgatagtg |
39509333 |
T |
|
| Q |
515 |
cagcggattctgttttctctcagttgaaaatagatgatgctagatagattttcatgt |
571 |
Q |
| |
|
| | | |||||||||||||| ||||||| | |||||||| |||||||||||||||| |
|
|
| T |
39509332 |
ctgggcattctgttttctctgagttgaaccttgatgatgccagatagattttcatgt |
39509276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 39509822 - 39510041
Alignment:
| Q |
1 |
gataaccgaaagttcccttaacacctgtgctgacataagaatgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagctacaagatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39509822 |
gataaccgaaagttcccttaacacctgtgctgacataagaatgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagctacaagatg |
39509921 |
T |
|
| Q |
101 |
ctcatcaagcaatatgttagtggacttcacatcgcggtgaatgattccaccagctgctcctttgtgaaggtaatgaagacctctagcagcaccaatacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39509922 |
ctcatcaagcaatatgttagtggacttcacatcgcggtgaatgattccaccagctgctcctttgtgaaggtaatgaagacctctagcagcaccaatacaa |
39510021 |
T |
|
| Q |
201 |
atctcaagcctttgcttcca |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
39510022 |
atctcaagcctttgcttcca |
39510041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 39542895 - 39543106
Alignment:
| Q |
9 |
aaagttcccttaacacctgtgctgacataagaatgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagctacaagatgctcatcaa |
108 |
Q |
| |
|
||||| || ||||||| |||||||||||||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39542895 |
aaagtccctttaacacgtgtgctgacataagaatgttcatcaagaggacctgtccttgaaagaccaaaatcagcaactttagctacaagattctcatcaa |
39542994 |
T |
|
| Q |
109 |
gcaatatgttagtggacttcacatcgcggtgaatgattccaccagctgctcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaag |
208 |
Q |
| |
|
||||||| |||||||| ||||| || |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39542995 |
gcaatatattagtggatttcacgtcacggtgaattattccaccagctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaag |
39543094 |
T |
|
| Q |
209 |
cctttgcttcca |
220 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39543095 |
cctttgcttcca |
39543106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 39574730 - 39574941
Alignment:
| Q |
9 |
aaagttcccttaacacctgtgctgacataagaatgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagctacaagatgctcatcaa |
108 |
Q |
| |
|
||||| || ||||||| |||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
39574730 |
aaagtccctttaacacatgtgctgacataagaatgttgatcaagaggacctgtccttgaaagaccaaaatcagcaactttagctacaagattctcgtcaa |
39574829 |
T |
|
| Q |
109 |
gcaatatgttagtggacttcacatcgcggtgaatgattccaccagctgctcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaag |
208 |
Q |
| |
|
||||||| |||||||| |||||||| ||||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39574830 |
gcaatatattagtggatttcacatcacggtggattattccaccggctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaag |
39574929 |
T |
|
| Q |
209 |
cctttgcttcca |
220 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39574930 |
cctttgcttcca |
39574941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 39579263 - 39579474
Alignment:
| Q |
9 |
aaagttcccttaacacctgtgctgacataagaatgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagctacaagatgctcatcaa |
108 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||| |||||||||||||| | ||||||| |||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
39579263 |
aaagtccctttaacacctgtgctcacataagaatgttgatcaagaggacctgcctttgaaaggccaaaatcagcaactttagcaacaagattctcatcaa |
39579362 |
T |
|
| Q |
109 |
gcaatatgttagtggacttcacatcgcggtgaatgattccaccagctgctcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaag |
208 |
Q |
| |
|
||||||| |||||||| |||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39579363 |
gcaatatattagtggatttcacatcacggtggattattccaccagcaactcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaag |
39579462 |
T |
|
| Q |
209 |
cctttgcttcca |
220 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39579463 |
cctttgcttcca |
39579474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 215 - 478
Target Start/End: Complemental strand, 39574532 - 39574284
Alignment:
| Q |
215 |
cttccatcaagggacaaattgatccaaactcacttagaaagtttagtgagacagtggagaaatgcttacaagatgatggttgtgataggccttcaatggg |
314 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||||| |||| ||||||||||| ||||| ||||||||||| ||| |||| ||||||||||| |||||| |
|
|
| T |
39574532 |
cttccatcaaggcacaaatcaatcaaaactcactaagaatatttagtgagactgtggaaaaatgcttacacgattatgggtgtgataggccaacaatggt |
39574433 |
T |
|
| Q |
315 |
tgatgtactgtgggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaatt |
414 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| || |||| || |
|
|
| T |
39574432 |
tgatgtgttgtgggacttggaatatgctttgcagcttcag---------------agagaaccgcatgaggatagttctagcagtgcttttgcatcactt |
39574348 |
T |
|
| Q |
415 |
caattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtcta |
478 |
Q |
| |
|
|||||||||||||||| | ||| |||||||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
39574347 |
caattgcctaatgttcagcatttaccttctctgtctacaccgactgaagtggatggcacgtcta |
39574284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 220 - 478
Target Start/End: Complemental strand, 39579060 - 39578817
Alignment:
| Q |
220 |
atcaagggacaaattgatccaaactcacttagaaagtttagtgagacagtggagaaatgcttacaagatgatggttgtgataggccttcaatgggtgatg |
319 |
Q |
| |
|
||||||| |||||| ||| |||||||||||||| ||||||||||| || | ||||||||||||||| ||||||||||||||| |||||| ||||| |
|
|
| T |
39579060 |
atcaaggcacaaatcaatcaaaactcacttagaatatttagtgagaccatgaaaaaatgcttacaagatcgtggttgtgataggccaacaatggttgatg |
39578961 |
T |
|
| Q |
320 |
tactgtgggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaattcaatt |
419 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| || |||| ||||||| |
|
|
| T |
39578960 |
tgttgtgggacttggaatatgctttgcagcttcag---------------agagaaccacatgaggatagttctagcagtgcttttgcatcacttcaatt |
39578876 |
T |
|
| Q |
420 |
gcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtcta |
478 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||| | ||| ||||| |||||||| |
|
|
| T |
39578875 |
gcctaatgttcagcgtttaccttctctgtctaccctgactaaagtggatggcacgtcta |
39578817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 215 - 478
Target Start/End: Complemental strand, 39542697 - 39542449
Alignment:
| Q |
215 |
cttccatcaagggacaaattgatccaaactcacttagaaagtttagtgagacagtggagaaatgcttacaagatgatggttgtgataggccttcaatggg |
314 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||||| |||| |||| ||||| ||||| ||||||||||| ||| |||||||||| ||||| |||||| |
|
|
| T |
39542697 |
cttccatcaaggcgcaaattaatcaaaactcactaagaatatttaacgagactgtggaaaaatgcttacatgattatggttgtgacaggccaacaatggt |
39542598 |
T |
|
| Q |
315 |
tgatgtactgtgggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaatt |
414 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| ||| |||||||| || |||||||||||||||||||| || ||| || |
|
|
| T |
39542597 |
tgatgtgttgtgggacttggaatatgctttgcagctgcag---------------agagaaccacacagggatagttctagcagtgcttttgcgtcactt |
39542513 |
T |
|
| Q |
415 |
caattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtcta |
478 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||| |||||| ||||| ||||| |||||||| |
|
|
| T |
39542512 |
caattgcctaatgttcagcgtttaccttctctgtctgcactgactgaagtggatggcacgtcta |
39542449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 579 - 627
Target Start/End: Complemental strand, 39509245 - 39509197
Alignment:
| Q |
579 |
caagtgtctcaagtaagtggaggagctgtttttattagatggctcactt |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39509245 |
caagtgtctcaagtaagtggaggagctgtttttattagatggctgactt |
39509197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 671
Target Start/End: Complemental strand, 39509070 - 39509016
Alignment:
| Q |
618 |
tggctcacttccctcttttgtccttgtttccttgtattttt-catacttagttat |
671 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
39509070 |
tggctcacttatctgttttgtccttgtttccttgtatttttacatccttagttat |
39509016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 46271722 - 46271664
Alignment:
| Q |
163 |
tgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttccat |
221 |
Q |
| |
|
||||||| || || ||||||| |||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
46271722 |
tgtgaagatagtgtagacctcgagcagctccaatgcatatctcaagcctttgcttccat |
46271664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 35904669 - 35904727
Alignment:
| Q |
163 |
tgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttccat |
221 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
35904669 |
tgtgaaggtaatgaagacctcttgcagcaccaatgcaaatctccaacctttgcttccat |
35904727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 27539484 - 27539426
Alignment:
| Q |
163 |
tgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttccat |
221 |
Q |
| |
|
||||||| || || ||||||| |||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
27539484 |
tgtgaagatagtgtagacctcgagcagctccaatgcatatctcaagcctttgcttccat |
27539426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University