View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20556_high_10 (Length: 429)
Name: NF20556_high_10
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 2 - 418
Target Start/End: Original strand, 31952330 - 31952747
Alignment:
| Q |
2 |
tcacagagtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaaatcttgatattcaaatggt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
31952330 |
tcacagagtggagagtccaacgatgggaatcatcttcccagcatgttgtcatccatccaatatttggaagttttcatggaaatcctgatattcaaatggt |
31952429 |
T |
|
| Q |
101 |
ttgggagtccaaagtggacattagtatttcgacaacagacgataagtcaaaggggatccatttcaatcgttttaattttctgatagatcttgggaccctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31952430 |
ttgggagtccaaagtggacattagtattccggcaacaaacgataagtcaaaagagatccatttcaatcgttttaattttctgatagatcttgggaccctc |
31952529 |
T |
|
| Q |
201 |
gcacgagttgtttactcagctcaaggaggtgaaattgtcgttgcttttctttacggtggaatccacatattttctggtttgacttttacacatgtagcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31952530 |
gcacgagttgtttactcagctcaaggtggtgaaattgtcgttgcttttctttacggtggaatccacatattttctggtttgacttttacacatgtagcca |
31952629 |
T |
|
| Q |
301 |
aatatcatattagtgttggatcatcaagtgctattcttgctttttctacaactagctattggtcagcttctgcttggcatgacacaaacaagggtgatcc |
400 |
Q |
| |
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| ||||| |||| |||||||||||||| ||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31952630 |
actatcagattaatgttggatcatcaattgctattcttgttttttctgcaactagctattgttcagcttctgcttggcatgacacaaacaagggtgatcc |
31952729 |
T |
|
| Q |
401 |
catgttgaaaataatctg |
418 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
31952730 |
catgttgaaaataatctg |
31952747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 416
Target Start/End: Complemental strand, 31950256 - 31949848
Alignment:
| Q |
9 |
gtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaaatcttgatattcaaatggtttgggag |
107 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | | ||| |||||||| |||| |
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|
| T |
31950256 |
gtggagagtccaatgatgggaatcatctttccaacatgttgtcctccatccaatatttggaagttttcatggaaagcctcctatgtgaatggtttaggag |
31950157 |
T |
|
| Q |
108 |
tccaaagtggacattagtatttcgacaacagacgataagtcaaaggggatccatttcaatcgttttaattttctgatagatcttgggaccctcgcacgag |
207 |
Q |
| |
|
||||||||||||||||||||| || ||||| | ||||||||||| ||||||||||||||| |||| || ||| ||||||||||||||||||||||||| |
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|
| T |
31950156 |
tccaaagtggacattagtattccggcaacacatgataagtcaaaaaggatccatttcaatcattttgatcttccaatagatcttgggaccctcgcacgag |
31950057 |
T |
|
| Q |
208 |
ttgtttactcagctcaaggaggtgaaattgtcgttgcttttctttacggtggaatccacatattttctggtttgacttttacacatgtagccaaatatca |
307 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| | ||||||| ||||| |
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|
| T |
31950056 |
ttgtttactcagctcaagatggtgaaattgtcgttgcttttcttcatggtggaatccacatattttcttgtttgacttttacacctttagccaactatca |
31949957 |
T |
|
| Q |
308 |
tattagtgttggatcatcaagtgctattcttgctttttctacaactagctattggtcagcttctgcttggcatgacacaaacaagggtgatcccatgttg |
407 |
Q |
| |
|
|||| |||||||||||||| || ||| | ||||||||||||| | | ||| |||||||||| |||||||| ||||||||||||||| |||||||| |
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|
| T |
31949956 |
gattaatgttggatcatcaattgtcgttcctactttttctacaacatgttgttgttcagcttctgtttggcatggcacaaacaagggtgaggccatgttg |
31949857 |
T |
|
| Q |
408 |
aaaataatc |
416 |
Q |
| |
|
||||||||| |
|
|
| T |
31949856 |
aaaataatc |
31949848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 3497806 - 3497390
Alignment:
| Q |
1 |
atcacagagtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaaatcttgatattcaaatgg |
99 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||||| | ||||||||| | ||| | | || |
|
|
| T |
3497806 |
atcacagggtggagagtccaacgatgggaatcatctttccagcctgttgtcctcaatccaatatttggaagtatggatggaaatcctcctatgcgtacgg |
3497707 |
T |
|
| Q |
100 |
tttgggagtccaaagtggacattagtatttcgacaacagacgataagtcaaaggggatccatttcaatcgttttaattttctgatagatcttgggaccct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |||| || ||| | | ||||||||||||| |
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|
| T |
3497706 |
tttgggagtccaaagtggacattagtataccagcaacagacgataagtcaaaagggatccatttcaatccttttgatcttccaaaatatcttgggaccct |
3497607 |
T |
|
| Q |
200 |
cgcacgagttgtttactcagctcaaggaggtgaaattgtcgttgcttttctttacggtggaatccacatattttctggtttgacttttacacatgtagcc |
299 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| |||||||||| || | || | | | |||||||||||||| || |||| || |||| || |
|
|
| T |
3497606 |
cgcacgagttgttttctcagctcaaggtggtgaaattgccgttgctttttttcaaggccgggtacgcatattttctggttcgaattttgaacctgtaacc |
3497507 |
T |
|
| Q |
300 |
aaatatcatattagtgttggatcatcaagtgctattcttgctttttctacaactagctattggtcagcttctgcttggcatgacacaaacaagggtgatc |
399 |
Q |
| |
|
|| ||| | |||| |||||||||||||| | || ||| |||||||||| |||| |||| || |||||||||| |||||||||||||| ||||||||| |
|
|
| T |
3497506 |
aactatgagattaatgttggatcatcaatttctgttcctgctttttctgcaacaagctgctgttcagcttctgtttggcatgacacaagcaagggtgagg |
3497407 |
T |
|
| Q |
400 |
ccatgttgaaaataatc |
416 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
3497406 |
ccatgctgaaaataatc |
3497390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 43236817 - 43236946
Alignment:
| Q |
9 |
gtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaaatcttgatattcaaatggtttgggag |
107 |
Q |
| |
|
||||||| |||||| | | ||||||| |||||||| |||||||||||||||||| ||| |||||||||| | ||| | | ||| | || |||||||| | |
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|
| T |
43236817 |
gtggagaatccaacaatgagaatcatttttccagcttgttgtcctccatccaatattttgaagttttcacgtaaagcctcctatgcgaacggtttggggg |
43236916 |
T |
|
| Q |
108 |
tccaaagtggacattagtatttcgacaaca |
137 |
Q |
| |
|
||||||||||||||||| ||| || ||||| |
|
|
| T |
43236917 |
tccaaagtggacattagcattccggcaaca |
43236946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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