View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20556_high_12 (Length: 406)
Name: NF20556_high_12
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_high_12 |
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| [»] scaffold0077 (2 HSPs) |
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| [»] scaffold0003 (2 HSPs) |
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| [»] scaffold0295 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 388
Target Start/End: Original strand, 41929822 - 41930198
Alignment:
| Q |
9 |
gagagaagaagaaatatgtttgtggatatcacgtggaggaccatttcaaacaattttggctactacaagaagatacaggttccactaactttcattaaat |
108 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
41929822 |
gagagaagaagaaatacgtttgtggatatcacgtggaggaccagttcaaacaattttggctactacaagaagatacaggttctacatactttcattaaat |
41929921 |
T |
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| Q |
109 |
tactttgcattattctttggataacatacaagttggtgaattttgtgtacctttgtgtgtcataaactttataaatgatcatgttaagttggtatatact |
208 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41929922 |
tactttgcattattctttggataacatacaagtt----aattttgtttacctttctgtgtcataaactttataaatgatcatgttaagtttgtatatact |
41930017 |
T |
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| Q |
209 |
atgacttgaataagatttaacattaaacaaatataaactcagaacttttagtttatatgcgttaaatataaggaagtaactcataacttttc-ttttatg |
307 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
41930018 |
atgacttgaataagatttcacagtaaacaaatataaactcataacttttagtttatatgcgttaaatataaggaagtaacgcataacttttcaccatata |
41930117 |
T |
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| Q |
308 |
cattaataatcataatttgacaatactcaaccttatatcttggtttggtttggtttaaccttatatacaagttggtcttat |
388 |
Q |
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| T |
41930118 |
cgttaataatcataatttgacaatactcaaccttatatcttggtttggtttggtttaaccttatatacaagttggtcttat |
41930198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 60380 - 60089
Alignment:
| Q |
9 |
gagagaagaagaaatatgtttgtggatatcacgtggaggaccatttcaaacaattttggctactacaagaagatacaggttccactaactttcattaaat |
108 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
60380 |
gagagaagaagaaatacgtttgtggatatcacgtggaggaccatttcaaacaattttggctactacaagaaaatacaggttccactaactttcattaaat |
60281 |
T |
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| Q |
109 |
tactttgcattattctttggataacatacaagttggtgaattttgtgtacctttgtgtgtcataaactttataaatgatcatgttaagttggtatatact |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60280 |
tactttgcattattctttggataacatacaagttggtgaattttgtgtacctttgtgtgtcataaactttataaatgatcatgttaagttggtatatact |
60181 |
T |
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| Q |
209 |
atgacttgaataagatttaacattaaacaaatataaactcagaacttttagtttatatgcgttaaatataaggaagtaactcataacttttc |
300 |
Q |
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| T |
60180 |
atgacttcaataagatttaacagtaaacaattataaactcataacttttagtttatatgcgttaaatataaggaagtaactcataacttttc |
60089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 50632 - 50336
Alignment:
| Q |
9 |
gagagaagaagaaatatgtttgtggatatcacgtggaggaccatttcaaacaattttggctactacaagaagatacaggttccactaactttcattaaat |
108 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
50632 |
gagagaagaagaaatacgtttgtggatatcacgtggaggaccatttcaaacaattttggctactacaagaaaatacaggttccactaactttcattaaat |
50533 |
T |
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| Q |
109 |
tactttgcattattcttt-----ggataacatacaagttggtgaattttgtgtacctttgtgtgtcataaactttataaatgatcatgttaagttggtat |
203 |
Q |
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| T |
50532 |
tattttgcattattctttaatttggataacatacaagttggtgaattttgtgtacctttgtgtgtcataaactttataaatgatcatgttaagttggtat |
50433 |
T |
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| Q |
204 |
atactatgacttgaataagatttaacattaaacaaatataaactcagaacttttagtttatatgcgttaaatataaggaagtaactcataacttttc |
300 |
Q |
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| T |
50432 |
atactatgacttcaataagatttaacagtaaacaactataaactcataacttttagtttatatgcgttaaatataaggaagtaactcataacttttc |
50336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 209852 - 209715
Alignment:
| Q |
9 |
gagagaagaagaaatatgtttgtggatatcacgtggaggaccatttcaaacaatttt-ggctactacaagaagatacaggttccactaactttcattaaa |
107 |
Q |
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||||||||||||| || |||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
209852 |
gagagaagaagaattacgtttgtcgatatcatgtggaagaccatttcaaacaatttttggctactacaagaagatacaggttccactaactttcattaaa |
209753 |
T |
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| Q |
108 |
ttactttgcattattctttggataacatacaagttggt |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
209752 |
ttactttgcattattctttggataacatacaagttggt |
209715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 209697 - 209644
Alignment:
| Q |
335 |
caaccttatatcttggtttggtttggtttaaccttatatacaagttggtcttat |
388 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
209697 |
caaccttatatcttggtttggtttggtttaaccttgtatacaagttggtcttat |
209644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 17776 - 17862
Alignment:
| Q |
137 |
caagttggtgaattttgtgtacctttgtgtgtcataaactttataaatgatcatgttaagttggtatatactatgacttgaataaga |
223 |
Q |
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| T |
17776 |
caagttggtgaattttgtgtacctttgtgtgtcataaactttataaatgatcatgttaagttggtatataatatgacttgaataaga |
17862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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