View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20556_high_21 (Length: 331)
Name: NF20556_high_21
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 39521145 - 39520837
Alignment:
| Q |
1 |
catttacttaggtttcatttctgtgacatttttagtaatcgacagtctggtctgacagatttccttctcttaatttatgacacttatgttgtgaatgtca |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39521145 |
catttacttaggtttcatttctgtgacgtttttagtaatcgacagtctggtctgacagatttccttctcttaatttatgacacttatgttgtgaatgtca |
39521046 |
T |
|
| Q |
101 |
ataatgacacaagtttgtcactacagatgccttattattatgattttgtggttcaatccgatgcctctgggaaactgaatgttaccgtacaacctaatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39521045 |
ataatgacacaagtttgtcactacagatgccttattattatgattttgtggttcaatccgatgcctctgggaacctgaatgttaccgtacaacctaatgt |
39520946 |
T |
|
| Q |
201 |
gtcggattttgtaccgaaagcatttttaaatgggctagaactaatgaaagtgattgaacaatctagtgaaattcccttcgatgatttggattcaaaggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39520945 |
gtcggattttgtaccgaaagcatttttaaatgggctagaactaatgaaagtgattgaacaatctagtgaaattcccttcgatgatttggattcaaaggtt |
39520846 |
T |
|
| Q |
301 |
agtcttcct |
309 |
Q |
| |
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||||||||| |
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| T |
39520845 |
agtcttcct |
39520837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 39575787 - 39575536
Alignment:
| Q |
1 |
catttacttaggtttcatttctgtgacatttttagtaatcgacagtctggtctgacagatttccttctcttaatttatgacacttatgttgtgaatgtca |
100 |
Q |
| |
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||||| |||||||||||||| |||||| |||| ||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39575787 |
cattttcttaggtttcatttttgtgacgttttcagtaatcgacaatctggtcttacagatttccttctcttaatttatgacaattatgttgtgaatgtca |
39575688 |
T |
|
| Q |
101 |
ataatgacacaagtttgtcactacagatgccttattattatgattttgtggttcaatccgatgcctctgggaaactgaatgttaccgtacaacctaatgt |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39575687 |
ataatgacacaagtttgtcactacaaatgccttattattatgattttgtggttcaatccgatgcctctgggaaactgaaggttaccgtacaacctaatgt |
39575588 |
T |
|
| Q |
201 |
gtcggattttgtaccgaaagcatttttaaatgggctagaactaatgaaagtg |
252 |
Q |
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|| ||||||||||||||| |||||||||||||| ||||||||||||| |||| |
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| T |
39575587 |
gttggattttgtaccgaacgcatttttaaatggactagaactaatgacagtg |
39575536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 39580314 - 39580071
Alignment:
| Q |
14 |
ttcatttctgtgacatttttagtaatcgacagtctggtctgacagatttccttctcttaatttatgacacttatgttgtgaatgtcaataatgacacaag |
113 |
Q |
| |
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||||||| ||||||||||||| | ||||||| |||||| | ||| |||| |||||| |||| |||| ||||||| | ||||| ||| || || ||| |
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| T |
39580314 |
ttcatttatgtgacatttttaatgatcgacaatctggttttacatttttcactctcttcattt--gacagttatgttataaatgtaaatgataaccaaag |
39580217 |
T |
|
| Q |
114 |
tttgtcactacagatgccttattattatgattttgtggttcaatccgatgcctctgggaaactgaatgttaccgtacaacctaatgtgtcggattttgta |
213 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||| |||||| |||| | | |||| |||||| || ||||||||||| | ||||||||| |
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| T |
39580216 |
tttgtcaatacagatgccttattattatgattttgtggttcgttccgataactctagcctattgaaggttaccataaaacctaatgtgaccgattttgta |
39580117 |
T |
|
| Q |
214 |
ccgaaagcatttttaaatgggctagaactaatgaaagtgattgaac |
259 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39580116 |
ccgaatgcatttttaaatgggctagaactaatgaaagtgattgaac |
39580071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 39510896 - 39510725
Alignment:
| Q |
1 |
catttacttaggtttcatttctgtgacatttttagtaatcgacagtctggtctgacagatttccttctcttaatttatgacacttatgttgtgaatgtca |
100 |
Q |
| |
|
||||| || ||| ||||||||||||||||||||||| |||||||||||| ||| ||| |||| |||||| |||||||||| ||||||||| || ||| |
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| T |
39510896 |
catttcctcaggcttcatttctgtgacatttttagtgatcgacagtctgctcttacaactttcaatctcttcatttatgacagttatgttgtatatatca |
39510797 |
T |
|
| Q |
101 |
ataatgacacaagtttgtcactacagatgccttattattatgattttgtggttcaatccgatgcctctggga |
172 |
Q |
| |
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|||||||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
39510796 |
ataatgacactagcctgtcaatacagatgccttattattatgatttcgtggttcaatccgatggctctggga |
39510725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 309
Target Start/End: Complemental strand, 39510676 - 39510579
Alignment:
| Q |
212 |
taccgaaagcatttttaaatgggctagaactaatgaaagtgattgaacaatctagtgaaattcccttcgatgatttggattcaaaggttagtcttcct |
309 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |
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| T |
39510676 |
taccgaatgcatttttaaatgggctagaactaatggaagtgattgaacaatctagtgaaattcccccggatgatatggattcgaaggttagtcttcct |
39510579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 39524639 - 39524486
Alignment:
| Q |
1 |
catttacttaggtttcatttctgtgacatttttagtaatcgacagtctggtctgacagatttccttctcttaatttatgacacttatgttgtgaatgtca |
100 |
Q |
| |
|
||||| |||| | ||||||| ||||||||||||||| ||| |||| ||||||| ||| |||| ||||||| ||||||||| ||||||| | ||||| | |
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| T |
39524639 |
catttccttatgcttcatttttgtgacatttttagtgatcaacagactggtcttacaactttcattctcttcgtttatgacagttatgttataaatgtaa |
39524540 |
T |
|
| Q |
101 |
ataatgacacaagtttgtcactacagatgccttattattatgattttgtggttc |
154 |
Q |
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|| || || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39524539 |
atgataaccaaagtttgtcactacagatgccttattattatgattttgtggttc |
39524486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 39524421 - 39524376
Alignment:
| Q |
213 |
accgaaagcatttttaaatgggctagaactaatgaaagtgattgaa |
258 |
Q |
| |
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|||||| || |||||||| ||||||||||||||||||||||||||| |
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| T |
39524421 |
accgaatgcttttttaaacgggctagaactaatgaaagtgattgaa |
39524376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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