View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20556_high_24 (Length: 288)
Name: NF20556_high_24
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_high_24 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 32059942 - 32059657
Alignment:
| Q |
1 |
atattgctattattca-ttctctgtcgcagccacaaattaaggtttctactcttccaaatactccacaatattgtagcaattaattctgctcgcatcgct |
99 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
32059942 |
atatttctattattcaattctctgtcgcagccacaaattaaggtttctactcttccaaatactccacaatattatagcaattaattctgcttgcatcgct |
32059843 |
T |
|
| Q |
100 |
gttacatgctccaacaaatggaaggtaatctccggcgcatcatcaaacctatttaacaacggctcaattaaggaccacagacctgctgtgcgccaaacac |
199 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
32059842 |
gttacatgctccaacaaatggaagataatctccggtgcatcatcaaacctatttaacaacggctcaattaaggaccacagaccttctgtgcgccatacac |
32059743 |
T |
|
| Q |
200 |
ctactgctgtacagcagcgggnnnnnnnnnggataactgtcctcatgggggtcattacacataatacacgtcgacggacaattaacccc |
288 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32059742 |
ctacttctgtacagcagtgg--aaaaaatacgataactgtcctcatgggggtcattacacat-atacacgtcgacggacaattaacccc |
32059657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 39533096 - 39533010
Alignment:
| Q |
130 |
tccggcgcatcatcaaacctatttaacaacggctcaattaaggaccacagacctgctgtgcgccaaacacctactgctgtacagcag |
216 |
Q |
| |
|
|||||||| |||| ||||| |||| ||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
39533096 |
tccggcgcgtcattgaacctgtttagtaacggctcaattaagtgccacaatcctgctgtacgccacacacctactgctgtacagcag |
39533010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 33098661 - 33098619
Alignment:
| Q |
37 |
ttaaggtttctactcttccaaatactccacaatattgtagcaa |
79 |
Q |
| |
|
||||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
33098661 |
ttaaggtttctgctcttccaaatactccataaaattgtagcaa |
33098619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University