View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20556_high_27 (Length: 257)
Name: NF20556_high_27
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 37598419 - 37598168
Alignment:
| Q |
1 |
agttcttaaaggttgcattattgaagccataaacgaaagattgcttcaaagtgatgtggcactatagagtccacttaagtcattcataataaattgtatc |
100 |
Q |
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| T |
37598419 |
agttcttaaaggttgcaatattgaagccataaacgaaagattgcttcaaaatgatgtggcactatagagtccacttaagtcattcataataaattgtatc |
37598320 |
T |
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| Q |
101 |
attggagatgctcttacaagcggcgtggcgtattttcacattgacggtcaagttctgctgttttatttttctcctacaaagagaactagttgaagaggct |
200 |
Q |
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| T |
37598319 |
attggagatactcttacaaacagcgtggcgtattttcacattgacggtcaagttttgctgttttatttttctcctacaaagagaactagttgaagaggct |
37598220 |
T |
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| Q |
201 |
cttgaatattgatcaaaccttatttattgccagattatctatctctggtcct |
252 |
Q |
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| T |
37598219 |
cttgaatattgatcaaaccttatttattgccagattatctatttgtggtcct |
37598168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 37602945 - 37602723
Alignment:
| Q |
1 |
agttcttaaaggttgcattattgaagccataaacgaaagattgcttcaaagtgatgtggcactatagagtccacttaagtcattcataataaattgtatc |
100 |
Q |
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||||||||| ||||||| |||||||| | |||||||||||||||||||||||| || ||| | |||||||||||||||||| ||||||||||||||||| |
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| T |
37602945 |
agttcttaagggttgcactattgaagttaaaaacgaaagattgcttcaaagtgacgtagcattgtagagtccacttaagtcactcataataaattgtatc |
37602846 |
T |
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| Q |
101 |
attggagatgctcttacaagcggcgtggcgtattttcacattgacggtcaagttctgctgttttatttttctcctacaaagaga----actagttgaaga |
196 |
Q |
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| T |
37602845 |
attggagatgctcttgcaagcggcgtgacatattttcaccttgacgatcaagctcagatgttttatttttctcctacaaagaaaagttactagttgaaga |
37602746 |
T |
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| Q |
197 |
ggctcttgaatattgatcaaacc |
219 |
Q |
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| T |
37602745 |
ggctcttgaatattggtcaaacc |
37602723 |
T |
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Back To:
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