View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20556_high_5 (Length: 703)
Name: NF20556_high_5
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 10 - 608
Target Start/End: Original strand, 9377910 - 9378506
Alignment:
| Q |
10 |
catcatcaatggcatcaccaaaatataaattattatatagactctacaaattgttaaactagtataaacaaaattttaatgaagaacgtgattcatgtaa |
109 |
Q |
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| T |
9377910 |
catcatcaatggcatcaccaaaatataaattattatatagactctacaaattgttaaactagtataaacaaaattttaataaagaacgtgattcatgtaa |
9378009 |
T |
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| Q |
110 |
ccgacatagcttcattaggacaaaaccttgaggttaattggatgttgacattgataatgaccatatgaatatcaaatgttgcattctcactcacataaat |
209 |
Q |
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| T |
9378010 |
ccgacataacttcattaggacaaaaccttgaggttaattggatgttgacattgataatgaccatatgaatatcaaatgtagcattctcactcacataaat |
9378109 |
T |
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| Q |
210 |
cattaaaattgtgattaaacactgaaataataaaagtatcctatgatcacacaatagtacaaaaatatcattattgaagcatcaagctagccatacacaa |
309 |
Q |
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| T |
9378110 |
cattaaaattgtgattaaacactgaaataataaaagtatcctatgatcacacaatagtacaaaaatatcattattgaagcatcaagctagccatacacaa |
9378209 |
T |
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| Q |
310 |
gccaagctaccaaagatggctcagatcccaaaacagtgcatatgctcagagtttatctcaaatgctaataaacnnnnnnnctactcaactaatatcaata |
409 |
Q |
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| T |
9378210 |
gccaagctaccaaagatggctcagattccaaaacagtgc--atgttcagagtttatctcaaaagctaataaactttttttttactcaactaatatcaata |
9378307 |
T |
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| Q |
410 |
aataattcttatnnnnnnnnttatgttatctgaacatcaaaatacaaataatatatgtcacagtgtcacacaatacgtggtatgtcacagtgtcacatca |
509 |
Q |
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| T |
9378308 |
aataattttcataaaaaaaattatgttatctgaacatcaaaatacaaataatgtatgtcacagtgtcacaccatacgtggtatgtcacagtgtcacatca |
9378407 |
T |
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| Q |
510 |
tacgtgattatcttttcttatatgttacgttttatcttctacaatattcacacatgtgaaaactacgtaaaataaccaaagaatgtcgtatttgacatc |
608 |
Q |
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| T |
9378408 |
tgcgtggttatcttttcttatatgctacgttttatcttctacaatattcacacatgtgaaaactacataaaataaccaaagaatgtcgtatttgacatc |
9378506 |
T |
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