View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20556_low_14 (Length: 380)
Name: NF20556_low_14
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_low_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 380
Target Start/End: Original strand, 38096486 - 38096851
Alignment:
| Q |
10 |
gcagagatgaaagcaaagcagcaggaagggaggctgagcaatgtggggaccacaagcaaaagaagggagagtgttgatgaagagaaagtgtattctggtg |
109 |
Q |
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| T |
38096486 |
gcagagatgaaagcaaagcagcaggaagggaggctgagcaatgtggggacaacaagcaagagaagggagagtgttgatgaagagaaagtgtattctggtg |
38096585 |
T |
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| Q |
110 |
atgaagatatatgtgtaacggagaatccaaggttgatggggaatttgcagagtgaagagaaggaatactttagtgggagtattgtggaatccatgaaagc |
209 |
Q |
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| T |
38096586 |
atgaagatatatgtgtaacggagaatccaaggttgatggggaatttgcagagtgaagagaaggaatactttagtgggagtattgtggaatccatgaaagc |
38096685 |
T |
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| Q |
210 |
aaaccgggttgcttttcaagctgaacctgtgctcaagaaatctaattcctataatgaagaaaggtacgtttctcattaattacttatagaatttctttta |
309 |
Q |
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| T |
38096686 |
aaaccgggttgcttttcaagctgaacctgtgctcaagaaatctaattcctataatgaagaaaggtacgtttctc----attacttttagaatttctttta |
38096781 |
T |
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| Q |
310 |
tttgttgtttaatttgttaccttttgttttcttacaggagaagcaggctagggatggatgaggtgaagtta |
380 |
Q |
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| T |
38096782 |
tttgttgtttaa-atgttaccttttgttttcttacaggagaagcaggctagggatggatgaggtgaagtta |
38096851 |
T |
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