View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20556_low_16 (Length: 351)
Name: NF20556_low_16
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 9063414 - 9063238
Alignment:
| Q |
1 |
tttgtggcaaatccttcaacatggttgaaaattttgaaacttcaatttttgtgtgaccagaccgatttagaaaaaatatgaatgttgcgtatgtgtgtaa |
100 |
Q |
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| T |
9063414 |
tttgtgacaaatccttcaacatggttgaaaattttgaaacttcaatttttgtgtgacca-----atttagaaaaaacatgaatgttgcgtatgtgtgtaa |
9063320 |
T |
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| Q |
101 |
tgtaattgttttgcctatttattgagtagagaacaaggaaacttgggacagagctttaattgatgttacttaattagtataa |
182 |
Q |
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| T |
9063319 |
tgtaattgttttgcctatttattgagtagagaacaaggaaacatgggatagagctttaattgatgttaattaattagtataa |
9063238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 9063049 - 9062972
Alignment:
| Q |
176 |
agtataaactcaagatcaaggttattattaaatattgcatttttgtagtgtggtgtaacaaaaggaaatgttgtgttc |
253 |
Q |
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| T |
9063049 |
agtataaactcaagatcaaggttattattaaatagtgcatttttgtagtgcggtgtaacaaaaggaaatgttgtgttc |
9062972 |
T |
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