View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20556_low_17 (Length: 345)
Name: NF20556_low_17
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_low_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 30612946 - 30612609
Alignment:
| Q |
1 |
gaaatgcttcaagctatcatagcaaataaagatatttgaatagttgattatcatcaaa-tgacaccaaacttgcaaaaaagttcatcaaagcccat---a |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30612946 |
gaaatgcttcaagctatcatagcaaataaagatatttgaatagttgattatcatcaaaatgacaccaaacttgcaaaaaagttcatcaaagcccatcata |
30612847 |
T |
|
| Q |
97 |
gatgagtgtaaatttggccacgattgcatttctgccaacaaccaactgacgcttttaggacaaattattaaggaacaagctacaatatttataaaatgtt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30612846 |
gatgagtgtaaatttggccacgattgcatttctgtcaacaaccaactgacgcttttaggacaaattattaaggaacaagctacaatatttataaaatgtt |
30612747 |
T |
|
| Q |
197 |
aagataaactccataacctaagtcattcaccagaaattttcagatcatctttatttaaaaatgttcaccataaacactataagcacttttactgcatagg |
296 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30612746 |
aaggtaaactccataacctaagtcattcaccagaaattttcagatcatctttatttagaaatgttcaccataaacactataagcacttttactgcatagg |
30612647 |
T |
|
| Q |
297 |
cccctagtatcaaatctctacataatctcacaagtata |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30612646 |
cccctagtatcaaatctctacataatctcacaagtata |
30612609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University