View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20556_low_2 (Length: 720)
Name: NF20556_low_2
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Complemental strand, 39509846 - 39509276
Alignment:
| Q |
1 |
ggtgttaagggaactttcggttatctcgatcctgagtactttagatcacaacagcttacagaaaaatctgatgtgtattcattcggggtggttctacttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39509846 |
ggtgttaagggaactttcggttatctcgatcctgagtactttagatcacaacagcttacagaaaaatctgatgtgtattcattcggcgtggttctacttg |
39509747 |
T |
|
| Q |
101 |
aagtattatgtgcaagaccagccattgaaccgtcgcttccaagggaacaggtgaacttggctgagtggggaattttttgcaaagacaaagggatacttga |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
39509746 |
aagtattatgtgcaagaacagccattgaaccgtcacttccaagggaacaagtgaacttagctcagtggggaattttttgcaaagacaaagggatacttga |
39509647 |
T |
|
| Q |
201 |
agatatcattgatccttccatcaagggacaaattgatccaaactcacttagaaagtttagtgagacagtggagaaatgcttacaagatgatggttgtgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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|
| T |
39509646 |
agatatcattgatccttccatcaagggacaaattgatccaaactcacttagaaagtttagtgagaaagtggaaaaatgcttacaagatgatggttgtgat |
39509547 |
T |
|
| Q |
301 |
aggccttcaatgggtgatgtactgtgggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctagcagtg |
400 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
39509546 |
aggccttcaatgggaaatgtaatgtgggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctaacagtg |
39509447 |
T |
|
| Q |
401 |
cttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtctatgtctattggtagagttattga |
500 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |||||| | ||||||||||||| || |||||||| |
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|
| T |
39509446 |
cttctgtatcaattcaattgcccaatgttcgccgtttaccttctctgaatacactgagtgaagtggatgatatgtctatgtctattttgagggttattga |
39509347 |
T |
|
| Q |
501 |
tgaatctgatagtgcagcggattctgttttctctcagttgaaaatagatgatgctagatagattttcatgt |
571 |
Q |
| |
|
||||||||||||||| | | |||||||||||||| ||||||| | |||||||| |||||||||||||||| |
|
|
| T |
39509346 |
tgaatctgatagtgctgggcattctgttttctctgagttgaaccttgatgatgccagatagattttcatgt |
39509276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 323 - 710
Target Start/End: Complemental strand, 39516592 - 39516205
Alignment:
| Q |
323 |
tgtgggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39516592 |
tgtgggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcc |
39516493 |
T |
|
| Q |
423 |
taatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtgcagcggat |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
39516492 |
taatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtgcagcagat |
39516393 |
T |
|
| Q |
523 |
tctgttttctctcagttgaaaatagatgatgctagatagattttcatgttttctcacaagtgtctcaagtaagtggaggagctgtttttattagatggct |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39516392 |
tctgttttctctcagttgaaaatagatgatgctagatagatattcatgttttctcacaagtgtctcaagtaagtggaggagctgtttttattagatggct |
39516293 |
T |
|
| Q |
623 |
cacttccctcttttgtccttgtttccttgtatttttcatacttagttatggttgttggtctattcttaatcgtaagactaatgatgat |
710 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39516292 |
cacttccctcttttgtccttgtttccttgtatttttcatacttggttatggttgttggtctattcttaattgtaagactaatgatgat |
39516205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 2 - 478
Target Start/End: Complemental strand, 39574745 - 39574284
Alignment:
| Q |
2 |
gtgttaagggaactttcggttatctcgatcctgagtactttagatcacaacagcttacagaaaaatctgatgtgtattcattcggggtggttctacttga |
101 |
Q |
| |
|
||||||| || ||||| || ||||| ||||| || |||||||||||||||||||||||||||||||| ||||| || || || ||||||||||||||||| |
|
|
| T |
39574745 |
gtgttaaagggacttttgggtatcttgatccggattactttagatcacaacagcttacagaaaaatccgatgtttactcttttggggtggttctacttga |
39574646 |
T |
|
| Q |
102 |
agtattatgtgcaagaccagccattgaaccgtcgcttccaagggaacaggtgaacttggctgagtggggaattttttgcaaagacaaagggatacttgaa |
201 |
Q |
| |
|
||| || || |||||||||||||| |||| ||| |||||| || || || || ||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
39574645 |
agtgttgtgcgcaagaccagccatagaactgtcttgtccaagtgagcaagtcaatttggctgagtggggattgcattgcaaagacaaagggatacttgaa |
39574546 |
T |
|
| Q |
202 |
gatatcattgatccttccatcaagggacaaattgatccaaactcacttagaaagtttagtgagacagtggagaaatgcttacaagatgatggttgtgata |
301 |
Q |
| |
|
|| ||| |||||||||||||||||| |||||| ||| ||||||||| |||| ||||||||||| ||||| ||||||||||| ||| |||| ||||||| |
|
|
| T |
39574545 |
gagatcgttgatccttccatcaaggcacaaatcaatcaaaactcactaagaatatttagtgagactgtggaaaaatgcttacacgattatgggtgtgata |
39574446 |
T |
|
| Q |
302 |
ggccttcaatgggtgatgtactgtgggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgc |
401 |
Q |
| |
|
|||| |||||| |||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
39574445 |
ggccaacaatggttgatgtgttgtgggacttggaatatgctttgcagcttcag---------------agagaaccgcatgaggatagttctagcagtgc |
39574361 |
T |
|
| Q |
402 |
ttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtcta |
478 |
Q |
| |
|
|| || |||| |||||||||||||||||| | ||| |||||||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
39574360 |
ttttgcatcacttcaattgcctaatgttcagcatttaccttctctgtctacaccgactgaagtggatggcacgtcta |
39574284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 39579279 - 39578817
Alignment:
| Q |
1 |
ggtgttaagggaactttcggttatctcgatcctgagtactttagatcacaacagcttacagaaaaatctgatgtgtattcattcggggtggttctacttg |
100 |
Q |
| |
|
|||||||| || ||||| || ||||| |||||||| ||||||||||||| ||| |||||||||||||| ||||| ||||| || |||||||||||||||| |
|
|
| T |
39579279 |
ggtgttaaagggacttttgggtatcttgatcctgattactttagatcactacaccttacagaaaaatccgatgtttattcttttggggtggttctacttg |
39579180 |
T |
|
| Q |
101 |
aagtattatgtgcaagaccagccattgaaccgtcgcttccaagggaacaggtgaacttggctgagtggggaattttttgcaaagacaaagggatacttga |
200 |
Q |
| |
|
|||| || || |||||||||||||| |||| ||| |||||| || || || || ||||||||||||||| | |||||||||||||||||| |||| | |
|
|
| T |
39579179 |
aagtgttgtgcgcaagaccagccatcgaactgtcttgtccaagtgagcaagtcaatttggctgagtggggattgctttgcaaagacaaagggacacttaa |
39579080 |
T |
|
| Q |
201 |
agatatcattgatccttccatcaagggacaaattgatccaaactcacttagaaagtttagtgagacagtggagaaatgcttacaagatgatggttgtgat |
300 |
Q |
| |
|
||| || ||||||| || ||||||| |||||| ||| |||||||||||||| ||||||||||| || | ||||||||||||||| |||||||||| |
|
|
| T |
39579079 |
agagattgttgatccctctatcaaggcacaaatcaatcaaaactcacttagaatatttagtgagaccatgaaaaaatgcttacaagatcgtggttgtgat |
39578980 |
T |
|
| Q |
301 |
aggccttcaatgggtgatgtactgtgggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctagcagtg |
400 |
Q |
| |
|
||||| |||||| |||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
39578979 |
aggccaacaatggttgatgtgttgtgggacttggaatatgctttgcagcttcag---------------agagaaccacatgaggatagttctagcagtg |
39578895 |
T |
|
| Q |
401 |
cttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtcta |
478 |
Q |
| |
|
||| || |||| |||||||||||||||||| ||||| |||||||||||||| |||| | ||| ||||| |||||||| |
|
|
| T |
39578894 |
cttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactaaagtggatggcacgtcta |
39578817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 2 - 478
Target Start/End: Complemental strand, 39542910 - 39542449
Alignment:
| Q |
2 |
gtgttaagggaactttcggttatctcgatcctgagtactttagatcacaacagcttacagaaaaatctgatgtgtattcattcggggtggttctacttga |
101 |
Q |
| |
|
||||||| || ||||| || ||||| |||||||| ||||||||| |||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
39542910 |
gtgttaaagggacttttgggtatcttgatcctgattactttagagcacaacagcttacagaaaaatctgatgtttattcttttggggtggttctacttga |
39542811 |
T |
|
| Q |
102 |
agtattatgtgcaagaccagccattgaaccgtcgcttccaagggaacaggtgaacttggctgagtggggaattttttgcaaagacaaagggatacttgaa |
201 |
Q |
| |
|
|| || || |||||||||||||| ||| ||| |||||| || || | || ||||||||||||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
39542810 |
ggtgttgtgcgcaagaccagccatcgaattgtcttgtccaagtgagcaaataaatttggctgagtggggattgttttgcaaaaacaaagggatacttgaa |
39542711 |
T |
|
| Q |
202 |
gatatcattgatccttccatcaagggacaaattgatccaaactcacttagaaagtttagtgagacagtggagaaatgcttacaagatgatggttgtgata |
301 |
Q |
| |
|
|| ||| |||||||||||||||||| |||||| ||| ||||||||| |||| |||| ||||| ||||| ||||||||||| ||| |||||||||| | |
|
|
| T |
39542710 |
gagatcgttgatccttccatcaaggcgcaaattaatcaaaactcactaagaatatttaacgagactgtggaaaaatgcttacatgattatggttgtgaca |
39542611 |
T |
|
| Q |
302 |
ggccttcaatgggtgatgtactgtgggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgc |
401 |
Q |
| |
|
|||| |||||| |||||| ||||||||||||||||| |||||||||| ||| |||||||| || |||||||||||||||||| |
|
|
| T |
39542610 |
ggccaacaatggttgatgtgttgtgggacttggaatatgctttgcagctgcag---------------agagaaccacacagggatagttctagcagtgc |
39542526 |
T |
|
| Q |
402 |
ttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtcta |
478 |
Q |
| |
|
|| || ||| |||||||||||||||||| ||||| |||||||||||| |||||| ||||| ||||| |||||||| |
|
|
| T |
39542525 |
ttttgcgtcacttcaattgcctaatgttcagcgtttaccttctctgtctgcactgactgaagtggatggcacgtcta |
39542449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 579 - 627
Target Start/End: Complemental strand, 39509245 - 39509197
Alignment:
| Q |
579 |
caagtgtctcaagtaagtggaggagctgtttttattagatggctcactt |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39509245 |
caagtgtctcaagtaagtggaggagctgtttttattagatggctgactt |
39509197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 671
Target Start/End: Complemental strand, 39509070 - 39509016
Alignment:
| Q |
618 |
tggctcacttccctcttttgtccttgtttccttgtattttt-catacttagttat |
671 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
39509070 |
tggctcacttatctgttttgtccttgtttccttgtatttttacatccttagttat |
39509016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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