View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20556_low_20 (Length: 332)

Name: NF20556_low_20
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20556_low_20
NF20556_low_20
[»] chr7 (4 HSPs)
chr7 (1-317)||(2837538-2837854)
chr7 (160-313)||(24502269-24502420)
chr7 (271-313)||(19362081-19362123)
chr7 (271-313)||(38389184-38389226)
[»] chr8 (6 HSPs)
chr8 (132-309)||(29669713-29669888)
chr8 (260-317)||(10364340-10364397)
chr8 (133-236)||(21400656-21400759)
chr8 (133-236)||(21795149-21795252)
chr8 (132-199)||(10364427-10364494)
chr8 (132-237)||(15894549-15894654)
[»] chr2 (7 HSPs)
chr2 (161-313)||(19989766-19989917)
chr2 (186-313)||(28757978-28758103)
chr2 (135-236)||(36340544-36340645)
chr2 (261-313)||(14331741-14331793)
chr2 (271-313)||(8275002-8275044)
chr2 (271-313)||(26226391-26226433)
chr2 (271-313)||(35002676-35002718)
[»] chr3 (5 HSPs)
chr3 (132-300)||(27208120-27208286)
chr3 (160-313)||(30931553-30931704)
chr3 (135-286)||(20515787-20515936)
chr3 (160-313)||(14443530-14443681)
chr3 (271-313)||(35067628-35067670)
[»] chr4 (2 HSPs)
chr4 (132-311)||(6597161-6597338)
chr4 (187-247)||(40714261-40714321)
[»] chr6 (7 HSPs)
chr6 (135-317)||(20211613-20211793)
chr6 (135-317)||(22105636-22105816)
chr6 (271-313)||(31518174-31518216)
chr6 (199-247)||(254056-254104)
chr6 (271-311)||(4320851-4320891)
chr6 (199-247)||(20443595-20443643)
chr6 (271-311)||(31485409-31485449)
[»] chr1 (4 HSPs)
chr1 (160-286)||(23942306-23942430)
chr1 (186-253)||(25232624-25232691)
chr1 (271-311)||(7320069-7320109)
chr1 (191-286)||(12065816-12065909)
[»] chr5 (3 HSPs)
chr5 (156-247)||(20520203-20520294)
chr5 (135-273)||(20885418-20885554)
chr5 (271-313)||(17342678-17342720)


Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 2837854 - 2837538
Alignment:
Q  1 gcttgataaatattgtaggattttcatatttataatttagggaagaaggtacacaaatatttaaatcgtcatcagcaagaaagagtcatttcgtagtaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2837854 gcttgataaatattgtaggattttcatatttataatttagggaagaaggtacacaaatatttaaatagtcatcagcaagaaagagtcatttcgtagtaaa 2837755  T
Q  101 aatcaggggaatgaaacatttcaagttatcatggaggtggagacaatattgtatgttatggaaatgctagttgatgcatcacttttttgatgtggagttt 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  2837754 aataaggggaatgaaacatttcaagttatcatggaggtggagacaacattgtatcttatggatatgctagttgatgcatcacttttttgatgtggagttt 2837655  T
Q  201 cattttataagggactttttagagacgttcttgaatgtcattccacttctccaacacttagaaaaataatcatcaacctcttctccaaatacacgtaacc 300  Q
    |||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2837654 cattttgtaagggactctttagagacgtttttgaatgtcattccacttctccaacacttagaaaaataatcatcaacctcttctccaaatacatgtaacc 2837555  T
Q  301 tttgccaatgaggatat 317  Q
    |||||||||||||||||    
T  2837554 tttgccaatgaggatat 2837538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 313
Target Start/End: Complemental strand, 24502420 - 24502269
Alignment:
Q  160 ggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttcttgaatgtcattccacttctccaacactt 259  Q
    ||||||||||||||| ||||||  | |||||||| ||||||||| || || |||  ||| | ||||| |||||||||  |||| |||| ||||| |||      
T  24502420 ggaaatgctagttgacgcatcatctctttgatgtagagtttcatcttgtatgggcatttcttgagactttcttgaataccattacactcctccatcac-- 24502323  T
Q  260 agaaaaataatcatcaacctcttctccaaatacacgtaacctttgccaatgagg 313  Q
    |||||||| ||||||||||||||||||   ||||| |||||||| |||||||||    
T  24502322 agaaaaatcatcatcaacctcttctccttgtacacttaaccttttccaatgagg 24502269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 19362123 - 19362081
Alignment:
Q  271 catcaacctcttctccaaatacacgtaacctttgccaatgagg 313  Q
    |||||||||||||||||| ||||  ||||||||||||||||||    
T  19362123 catcaacctcttctccaattacaactaacctttgccaatgagg 19362081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 38389184 - 38389226
Alignment:
Q  271 catcaacctcttctccaaatacacgtaacctttgccaatgagg 313  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||    
T  38389184 catcaacctcttctccaattacacttaaccttcgccaatgagg 38389226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 132 - 309
Target Start/End: Complemental strand, 29669888 - 29669713
Alignment:
Q  132 tggaggtggagacaatattgtatgttatggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttct 231  Q
    ||||||||||||||| ||| | | ||  ||||| ||||||| ||||||||| | ||||||||||||||||||||| ||||||| ||||| ||||| ||||    
T  29669888 tggaggtggagacaacattttgtattccggaaacgctagttaatgcatcacctctttgatgtggagtttcattttgtaagggatttttttgagacattct 29669789  T
Q  232 tgaatgtcattccacttctccaacacttagaaaaataatcatcaacctcttctccaaatacacgtaacctttgccaat 309  Q
    |||||||||||| ||| ||||| ||  ||||||||| ||||||||||||||||||| |||||| |||||||| |||||    
T  29669788 tgaatgtcattctactcctccatca--tagaaaaatcatcatcaacctcttctccacatacacttaaccttttccaat 29669713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 10364397 - 10364340
Alignment:
Q  260 agaaaaataatcatcaacctcttctccaaatacacgtaacctttgccaatgaggatat 317  Q
    |||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||    
T  10364397 agaaaaatcatcatcaacttcttatccacatacacgtaacctttgccaatgaggatat 10364340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 21400656 - 21400759
Alignment:
Q  133 ggaggtggagacaatattgtatgttatggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttctt 232  Q
    |||||||||||||| ||| | | |||| ||||||  |||||||||||||| | ||| ||||| ||||||||||| |||||||| ||||  |||||||| |    
T  21400656 ggaggtggagacaacattatgtcttatagaaatgacagttgatgcatcacctcttttatgtgaagtttcattttgtaagggaccttttttagacgttcct 21400755  T
Q  233 gaat 236  Q
    ||||    
T  21400756 gaat 21400759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 21795149 - 21795252
Alignment:
Q  133 ggaggtggagacaatattgtatgttatggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttctt 232  Q
    |||||||||||||| ||| | | |||| ||||||  |||||||||||||| | ||| ||||| ||||||||||| |||||||| ||||  |||||||| |    
T  21795149 ggaggtggagacaacattatgtcttatagaaatgacagttgatgcatcacctcttttatgtgaagtttcattttgtaagggaccttttttagacgttcct 21795248  T
Q  233 gaat 236  Q
    ||||    
T  21795249 gaat 21795252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 10364494 - 10364427
Alignment:
Q  132 tggaggtggagacaatattgtatgttatggaaatgctagttgatgcatcacttttttgatgtggagtt 199  Q
    ||||||||||||||| ||||| | || | |||||||||| ||| ||||||| | ||||||||||||||    
T  10364494 tggaggtggagacaacattgtgtcttctagaaatgctagctgacgcatcacctctttgatgtggagtt 10364427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 15894549 - 15894654
Alignment:
Q  132 tggaggtggagacaatattgtatgttatggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttct 231  Q
    ||||||||||||||| |||||||  |  | |||| ||||||||  || ||| | |||||||||| ||||||| |||| ||||  | ||| ||||||||||    
T  15894549 tggaggtggagacaacattgtatcctccgaaaatcctagttgacacaacacctctttgatgtggtgtttcatcttattaggggatattttgagacgttct 15894648  T
Q  232 tgaatg 237  Q
    ||||||    
T  15894649 tgaatg 15894654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 161 - 313
Target Start/End: Complemental strand, 19989917 - 19989766
Alignment:
Q  161 gaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttcttgaatgtcattccacttctccaacactta 260  Q
    |||||||||||||| ||||||| | ||||||||||||||||||||| ||| ||||||||| |||| ||||||||||| ||||||||| ||||| |||       
T  19989917 gaaatgctagttgacgcatcacctctttgatgtggagtttcattttgtaaaggacttttttgagatgttcttgaatgccattccactcctccatcac-ag 19989819  T
Q  261 gaaaaataatcatcaacctcttctccaaatacacgtaacctttgccaatgagg 313  Q
    ||||||| |  |||||||||||||||| |||||  |||||||||| |||||||    
T  19989818 gaaaaatcagtatcaacctcttctccacatacatttaacctttgcaaatgagg 19989766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 28758103 - 28757978
Alignment:
Q  186 tttgatgtggagtttcattttataagggactttttagagacgttcttgaatgtcattccacttctccaacacttagaaaaataatcatcaacctcttctc 285  Q
    |||||||| ||||||||| || ||||||  | | | ||||||||||||||||||||||||||  |||| |||  |||||||| |||||||| ||||| ||    
T  28758103 tttgatgtagagtttcatattgtaagggcttgtcttgagacgttcttgaatgtcattccactattccatcac--agaaaaatcatcatcaatctcttgtc 28758006  T
Q  286 caaatacacgtaacctttgccaatgagg 313  Q
    |   ||||| |||||||| |||||||||    
T  28758005 cttgtacacttaaccttttccaatgagg 28757978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 36340645 - 36340544
Alignment:
Q  135 aggtggagacaatattgtatgttatggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttcttga 234  Q
    |||| ||||||| ||||| | || | |||||||||||| || |||||| | ||| ||||| ||||||||||| |||| || ||||| |||||||| ||||    
T  36340645 aggtagagacaacattgtgtcttgtagaaatgctagttaatacatcacctctttaatgtgaagtttcattttgtaagagatttttttgagacgttattga 36340546  T
Q  235 at 236  Q
    ||    
T  36340545 at 36340544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 14331741 - 14331793
Alignment:
Q  261 gaaaaataatcatcaacctcttctccaaatacacgtaacctttgccaatgagg 313  Q
    |||||||  ||||||||||||||||||  ||||| ||||||||||||||||||    
T  14331741 gaaaaatgttcatcaacctcttctccatgtacacttaacctttgccaatgagg 14331793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 8275002 - 8275044
Alignment:
Q  271 catcaacctcttctccaaatacacgtaacctttgccaatgagg 313  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||    
T  8275002 catcaacctcttctccaattacacttaaccttcgccaatgagg 8275044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 26226391 - 26226433
Alignment:
Q  271 catcaacctcttctccaaatacacgtaacctttgccaatgagg 313  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||    
T  26226391 catcaacctcttctccaattacacataaccttcgccaatgagg 26226433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 35002718 - 35002676
Alignment:
Q  271 catcaacctcttctccaaatacacgtaacctttgccaatgagg 313  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||    
T  35002718 catcaacctcttgtccaattacacttaacctttgccaatgagg 35002676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 132 - 300
Target Start/End: Complemental strand, 27208286 - 27208120
Alignment:
Q  132 tggaggtggagacaatattgtatgttatggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttct 231  Q
    ||||||||||||||| ||||| | || ||  ||||||  |||||||||||||| ||||||||| | |||||||||||||| |||||||| ||||||||||    
T  27208286 tggaggtggagacaacattgtgtcttctgtgaatgctgattgatgcatcacttctttgatgtgaaatttcattttataagagacttttttgagacgttct 27208187  T
Q  232 tgaatgtcattccacttctccaacacttagaaaaataatcatcaacctcttctccaaatacacgtaacc 300  Q
    |||||   ||||| ||  |||| |||  | |||||| ||||||||  |||| | |||||||||||||||    
T  27208186 tgaatactattcctctcttccatcac--ataaaaatcatcatcaatttcttattcaaatacacgtaacc 27208120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 313
Target Start/End: Original strand, 30931553 - 30931704
Alignment:
Q  160 ggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttcttgaatgtcattccacttctccaacactt 259  Q
    |||||||||| |||| ||||||  | |||||||||||||||||| || ||||||  ||| | |||| ||||||||||| ||||||||| ||||| |||      
T  30931553 ggaaatgctatttgacgcatcatctctttgatgtggagtttcatattgtaagggcttttcttgagaagttcttgaatgccattccactcctccatcac-- 30931650  T
Q  260 agaaaaataatcatcaacctcttctccaaatacacgtaacctttgccaatgagg 313  Q
     ||||||| |||||||| || ||||||   |||||  ||||||| |||||||||    
T  30931651 ggaaaaatcatcatcaatcttttctccttgtacacacaaccttttccaatgagg 30931704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 286
Target Start/End: Original strand, 20515787 - 20515936
Alignment:
Q  135 aggtggagacaatattgtatgttatggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttcttga 234  Q
    |||||||||||| |||||   ||  |||||||||| |||| ||||||  | |||||||| ||||||||| || ||||||  | | | |||||||||||||    
T  20515787 aggtggagacaaaattgtggtttccggaaatgctatttgacgcatcatctctttgatgtagagtttcatattgtaagggcttgtcttgagacgttcttga 20515886  T
Q  235 atgtcattccacttctccaacacttagaaaaataatcatcaacctcttctcc 286  Q
    ||| |||||||||  |||| |||   ||||||| |||||||| |||||||||    
T  20515887 atgccattccactcttccatcac--ggaaaaatcatcatcaatctcttctcc 20515936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 313
Target Start/End: Original strand, 14443530 - 14443681
Alignment:
Q  160 ggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttcttgaatgtcattccacttctccaacactt 259  Q
    ||||||| || |||| ||||||  | |||||||||||||||||| |  ||||||  ||| | |||| || |||||||| ||||||||| ||||| |||      
T  14443530 ggaaatgttatttgacgcatcatctctttgatgtggagtttcatatcgtaagggcttttcttgagaagtccttgaatgccattccactcctccatcac-- 14443627  T
Q  260 agaaaaataatcatcaacctcttctccaaatacacgtaacctttgccaatgagg 313  Q
     ||||||| |||||||| || ||||||   |||||  ||||||| |||||||||    
T  14443628 ggaaaaatcatcatcaatcttttctccttgtacacacaaccttttccaatgagg 14443681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 35067670 - 35067628
Alignment:
Q  271 catcaacctcttctccaaatacacgtaacctttgccaatgagg 313  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||    
T  35067670 catcaacctcttctccaattacacttaaccttcgccaatgagg 35067628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 132 - 311
Target Start/End: Original strand, 6597161 - 6597338
Alignment:
Q  132 tggaggtggagacaatattgtatgttatggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttct 231  Q
    ||||||||||||||| ||||| | ||  |||||| ||||| |  ||||||| | ||| ||||| |||||||| || |||| | || ||| ||||||||||    
T  6597161 tggaggtggagacaacattgtgtcttcaggaaatcctagtcggagcatcacctctttaatgtgtagtttcatcttgtaagaggctcttttgagacgttct 6597260  T
Q  232 tgaatgtcattccacttctccaacacttagaaaaataatcatcaacctcttctccaaatacacgtaacctttgccaatga 311  Q
    |||||| ||||||| | ||||| ||  | ||||| | |||||||||||||||||||  ||||| |||||||| |||||||    
T  6597261 tgaatggcattccattcctccatca--tggaaaagtgatcatcaacctcttctccatgtacacttaaccttttccaatga 6597338  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 40714321 - 40714261
Alignment:
Q  187 ttgatgtggagtttcattttataagggactttttagagacgttcttgaatgtcattccact 247  Q
    |||||||| ||||| | ||| ||||||||||||| ||| ||||||| ||||||||||||||    
T  40714321 ttgatgtgtagttttaatttgtaagggacttttttgagtcgttcttaaatgtcattccact 40714261  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 317
Target Start/End: Complemental strand, 20211793 - 20211613
Alignment:
Q  135 aggtggagacaatattgtatgttatggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttcttga 234  Q
    |||||| ||||| ||||| | ||  |||||||||||||||  |||||| | ||||||||| ||||||||||| ||||||  ||||| ||||| ||||| |    
T  20211793 aggtggggacaacattgtgttttccggaaatgctagttgacacatcacctatttgatgtgaagtttcattttttaaggggattttttgagacattcttta 20211694  T
Q  235 atgtcattccacttctccaacacttagaaaaataatcatcaacctcttctccaaatacacgtaacctttgccaatgaggatat 317  Q
    | ||||||||||| ||||| |||   ||||| | ||||||||| |||||| || || |  |||||||||  ||||||||||||    
T  20211693 aagtcattccactcctccatcac--ggaaaactcatcatcaacatcttcttcacattcttgtaacctttttcaatgaggatat 20211613  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 317
Target Start/End: Complemental strand, 22105816 - 22105636
Alignment:
Q  135 aggtggagacaatattgtatgttatggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttcttga 234  Q
    |||||| ||||| ||||| | ||  |||||||||||||||  |||||| | ||||||||| ||||||||||| ||||||  ||||| ||||| ||||| |    
T  22105816 aggtggggacaacattgtgttttccggaaatgctagttgacacatcacctatttgatgtgaagtttcattttttaaggggattttttgagacattcttta 22105717  T
Q  235 atgtcattccacttctccaacacttagaaaaataatcatcaacctcttctccaaatacacgtaacctttgccaatgaggatat 317  Q
    | ||||||||||| ||||| |||   ||||| | ||||||||| |||||| || || |  |||||||||  ||||||||||||    
T  22105716 aagtcattccactcctccatcac--ggaaaactcatcatcaacatcttcttcacattcttgtaacctttttcaatgaggatat 22105636  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 31518174 - 31518216
Alignment:
Q  271 catcaacctcttctccaaatacacgtaacctttgccaatgagg 313  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||    
T  31518174 catcaacctcttctccaattacacttaaccttcgccaatgagg 31518216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 254056 - 254104
Alignment:
Q  199 ttcattttataagggactttttagagacgttcttgaatgtcattccact 247  Q
    ||||||| |||||||||||| | ||||||||||||||  ||||||||||    
T  254056 ttcatttgataagggactttcttgagacgttcttgaacatcattccact 254104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 4320851 - 4320891
Alignment:
Q  271 catcaacctcttctccaaatacacgtaacctttgccaatga 311  Q
    |||||||||||||||||||||||| |||| || ||||||||    
T  4320851 catcaacctcttctccaaatacacttaacattcgccaatga 4320891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 20443643 - 20443595
Alignment:
Q  199 ttcattttataagggactttttagagacgttcttgaatgtcattccact 247  Q
    ||||||| |||||||||||| | |||||||||||||||  |||||||||    
T  20443643 ttcatttgataagggactttcttgagacgttcttgaataccattccact 20443595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 31485409 - 31485449
Alignment:
Q  271 catcaacctcttctccaaatacacgtaacctttgccaatga 311  Q
    |||||||||||||||||| ||||| ||||||| ||||||||    
T  31485409 catcaacctcttctccaattacacttaaccttcgccaatga 31485449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 286
Target Start/End: Complemental strand, 23942430 - 23942306
Alignment:
Q  160 ggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttcttgaatgtcattccacttctccaacactt 259  Q
    |||||||||| |||||||||||  | |||||||||||||||||| || ||||||  ||| | |||| ||||||||||||||||||||| ||||| |||      
T  23942430 ggaaatgctatttgatgcatcatctctttgatgtggagtttcatattgtaagggcttttcttgagaagttcttgaatgtcattccactcctccatcac-- 23942333  T
Q  260 agaaaaataatcatcaacctcttctcc 286  Q
     ||||||| |||||||| || ||||||    
T  23942332 ggaaaaatcatcatcaatcttttctcc 23942306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 25232691 - 25232624
Alignment:
Q  186 tttgatgtggagtttcattttataagggactttttagagacgttcttgaatgtcattccacttctcca 253  Q
    |||||| || || ||||||| |||||||||||| | ||||||||||||||| |||||||||| |||||    
T  25232691 tttgatttgtagcttcatttgataagggactttcttgagacgttcttgaatatcattccactcctcca 25232624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 7320069 - 7320109
Alignment:
Q  271 catcaacctcttctccaaatacacgtaacctttgccaatga 311  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  7320069 catcaacctcttctccaattacacttaacctttgccaatga 7320109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 286
Target Start/End: Complemental strand, 12065909 - 12065816
Alignment:
Q  191 tgtggagtttcattttataagggactttttagagacgttcttgaatgtcattccacttctccaacacttagaaaaataatcatcaacctcttctcc 286  Q
    ||||||||||||| || ||||||  ||| | |||| ||||||||||| ||||||||| ||||| |||  |||||||| |||||||| || ||||||    
T  12065909 tgtggagtttcatattgtaagggcttttcttgagaagttcttgaatgccattccactcctccatcac--agaaaaatcatcatcaatcttttctcc 12065816  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 20520203 - 20520294
Alignment:
Q  156 ttatggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttcttgaatgtcattccact 247  Q
    ||||||||||||||||||| ||||||  | |||||| || ||||||||||| ||||| |||||||| ||| ||||||||||  |||||||||    
T  20520203 ttatggaaatgctagttgacgcatcatctctttgatatgtagtttcattttgtaaggaactttttaaagatgttcttgaataccattccact 20520294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 273
Target Start/End: Original strand, 20885418 - 20885554
Alignment:
Q  135 aggtggagacaatattgtatgttatggaaatgctagttgatgcatcacttttttgatgtggagtttcattttataagggactttttagagacgttcttga 234  Q
    |||||||||||| |||||   ||  ||||||| || |||| ||||||  | |||||||||||||||||| || ||||||  ||| | |||| ||||||||    
T  20885418 aggtggagacaagattgtggtttccggaaatgatatttgacgcatcatctctttgatgtggagtttcatattgtaagggcttttcttgagaagttcttga 20885517  T
Q  235 atgtcattccacttctccaacacttagaaaaataatcat 273  Q
    ||||||||||||| ||||| ||  | |||||||||||||    
T  20885518 atgtcattccactcctccatca--tggaaaaataatcat 20885554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 17342720 - 17342678
Alignment:
Q  271 catcaacctcttctccaaatacacgtaacctttgccaatgagg 313  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  17342720 catcaacctcttctccaattacacttaacctttgccaatgagg 17342678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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