View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20556_low_23 (Length: 301)

Name: NF20556_low_23
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20556_low_23
NF20556_low_23
[»] chr8 (7 HSPs)
chr8 (1-126)||(1786559-1786684)
chr8 (213-301)||(1786771-1786859)
chr8 (41-126)||(30936783-30936868)
chr8 (5-124)||(3877646-3877765)
chr8 (3-74)||(30089121-30089192)
chr8 (81-125)||(533589-533633)
chr8 (10-126)||(13800722-13800829)
[»] chr5 (4 HSPs)
chr5 (3-126)||(39885721-39885844)
chr5 (209-264)||(39885572-39885627)
chr5 (3-126)||(31480535-31480649)
chr5 (81-125)||(24782864-24782908)
[»] chr3 (10 HSPs)
chr3 (3-126)||(29702464-29702587)
chr3 (3-126)||(20107951-20108074)
chr3 (209-300)||(53283973-53284064)
chr3 (2-126)||(5234611-5234735)
chr3 (3-122)||(53284152-53284271)
chr3 (209-264)||(29702681-29702736)
chr3 (44-126)||(55406267-55406348)
chr3 (3-126)||(33213490-33213604)
chr3 (81-125)||(39831356-39831400)
chr3 (81-126)||(29835674-29835719)
[»] chr4 (10 HSPs)
chr4 (3-126)||(15530135-15530262)
chr4 (1-126)||(42063076-42063201)
chr4 (1-126)||(47028173-47028298)
chr4 (209-264)||(15530356-15530411)
chr4 (72-126)||(45988260-45988314)
chr4 (75-126)||(28682959-28683010)
chr4 (76-126)||(4922399-4922449)
chr4 (76-126)||(27296178-27296228)
chr4 (81-125)||(55917556-55917600)
chr4 (81-121)||(20135320-20135360)
[»] chr7 (7 HSPs)
chr7 (2-126)||(47329550-47329674)
chr7 (1-126)||(34095737-34095862)
chr7 (41-126)||(29263282-29263367)
chr7 (3-126)||(6444048-6444170)
chr7 (76-126)||(19465332-19465382)
chr7 (81-125)||(45974328-45974372)
chr7 (81-125)||(29245169-29245213)
[»] chr2 (10 HSPs)
chr2 (2-126)||(37080611-37080735)
chr2 (9-124)||(7090997-7091112)
chr2 (9-108)||(33751587-33751686)
chr2 (81-125)||(15332638-15332682)
chr2 (81-125)||(16431756-16431800)
chr2 (81-125)||(17692499-17692543)
chr2 (47-111)||(30778411-30778475)
chr2 (81-125)||(37259826-37259870)
chr2 (76-126)||(14101861-14101911)
chr2 (81-125)||(14805728-14805772)
[»] chr6 (3 HSPs)
chr6 (2-126)||(4181128-4181252)
chr6 (3-125)||(7124409-7124531)
chr6 (81-126)||(944991-945036)
[»] chr1 (6 HSPs)
chr1 (1-126)||(45319680-45319805)
chr1 (75-125)||(12983425-12983475)
chr1 (81-126)||(39242516-39242561)
chr1 (81-126)||(49410416-49410461)
chr1 (81-125)||(45346419-45346463)
chr1 (81-117)||(22105547-22105583)
[»] scaffold0662 (1 HSPs)
scaffold0662 (1-126)||(7052-7177)
[»] scaffold0896 (1 HSPs)
scaffold0896 (3-125)||(1832-1955)
[»] scaffold0166 (1 HSPs)
scaffold0166 (81-125)||(25247-25291)


Alignment Details
Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 1786559 - 1786684
Alignment:
Q  1 cgtgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1786559 cgtgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggatta 1786658  T
Q  101 agcacctcactagtgttattgtgttg 126  Q
    ||||||||||||||||||||||||||    
T  1786659 agcacctcactagtgttattgtgttg 1786684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 213 - 301
Target Start/End: Original strand, 1786771 - 1786859
Alignment:
Q  213 ttttagatcctaactaattaattttgattattctttcatgaacgtccaccatatccaccaccatctgcacgacggtcgccgcctccgcc 301  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1786771 ttttagatcctaactaattaattttgattattctttcataaacgtccaccatatccaccaccatctgcacgacggtcgccgcctccgcc 1786859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 30936783 - 30936868
Alignment:
Q  41 atttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaagcacctcactagtgttattgtgttg 126  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||  |||||||||||||||  |||||||||||||    
T  30936783 atttgctcaatatgttccaccataaactagttttattagattttttgaaccatcaaattaagcacctcactgttgttattgtgttg 30936868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 3877646 - 3877765
Alignment:
Q  5 tcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaagca 104  Q
    ||||||||| ||||||||| ||  ||||| ||||| |  |||||||||| |||||||||| ||||  ||||||||||||||||||| |||  ||||| ||    
T  3877646 tcatgtgtgttgattgttgaatgttatgtaatgtgtacctgctcaatatattccaccgtagactaactttattagattttttgaaccatcaaattaatca 3877745  T
Q  105 cctcactagtgttattgtgt 124  Q
    |||| |||  ||||||||||    
T  3877746 cctcgctaaagttattgtgt 3877765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 30089192 - 30089121
Alignment:
Q  3 tgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagtttt 74  Q
    ||||||||||||||||||||||||  |||||  |||| |  ||||||||||||||||||||| |||| ||||    
T  30089192 tgtcatgtgtgctgattgttgcatgatatgtactgtgtacctgctcaatatgttccaccgtagactaatttt 30089121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 533633 - 533589
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgtt 125  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  533633 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 533589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 13800722 - 13800829
Alignment:
Q  10 tgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaagcacctca 109  Q
    ||||||||||||||||| ||||||  |||| |  |||||||||||||||| |||| ||||| |||         ||||||| ||| |||||| |||||||    
T  13800722 tgtgctgattgttgcatggtatgtattgtgtacctgctcaatatgttccatcgtagactagcttt---------tttgaaccatcagattaaacacctca 13800812  T
Q  110 ctagtgttattgtgttg 126  Q
    ||| |||||||||||||    
T  13800813 ctaatgttattgtgttg 13800829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 39885844 - 39885721
Alignment:
Q  3 tgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaag 102  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||     
T  39885844 tgtcatgtgtgctgattgttgcatagtatgtgatgtgcatctgctcgatatgttccaccgtagactagttttattagattttttgaactatcagattaaa 39885745  T
Q  103 cacctcactagtgttattgtgttg 126  Q
    |||||||||||| |||||||||||    
T  39885744 cacctcactagtattattgtgttg 39885721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 39885627 - 39885572
Alignment:
Q  209 attgttttagatcctaactaattaattttgattattctttcatgaacgtccaccat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39885627 attgttttagatcctaactaattaattttgattattctttcatgaacgtccaccat 39885572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 31480535 - 31480649
Alignment:
Q  3 tgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaag 102  Q
    |||||||||||||||||||||||| ||||||  |||| |  |||||||||||||||| |||| ||         ||| |||||||||| ||| |||||||    
T  31480535 tgtcatgtgtgctgattgttgcatggtatgtattgtgtacctgctcaatatgttccatcgtagac---------tagcttttttgaaccatcagattaag 31480625  T
Q  103 cacctcactagtgttattgtgttg 126  Q
    |||||||||| |||||||||||||    
T  31480626 cacctcactaatgttattgtgttg 31480649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 24782864 - 24782908
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgtt 125  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  24782864 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 24782908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 29702464 - 29702587
Alignment:
Q  3 tgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaag 102  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||     
T  29702464 tgtcatgtgtgctgattgttgcatagtatgtgatgtgcatctgctcgatatgttccaccgtagactagttttattagattttttgaactatcagattaaa 29702563  T
Q  103 cacctcactagtgttattgtgttg 126  Q
    |||||||||||| |||||||||||    
T  29702564 cacctcactagtattattgtgttg 29702587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 20108074 - 20107951
Alignment:
Q  3 tgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaag 102  Q
    ||||||||||| | ||||||||||| |||||| ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||     
T  20108074 tgtcatgtgtgtttattgttgcataatatgtgttgtgcatctgctcaatatgttctaccgtagactagttttattagattttttgaaccatcggattaaa 20107975  T
Q  103 cacctcactagtgttattgtgttg 126  Q
    |||||||||||| |||||||||||    
T  20107974 cacctcactagtcttattgtgttg 20107951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 53284064 - 53283973
Alignment:
Q  209 attgttttagatcctaactaattaattttgattattctttcatgaacgtccaccatatccaccaccatctgcacgacggtcgccgcctccgc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  53284064 attgttttagatcctaactaattaattttgattattctttcatgaacgtccaccatatccaccaccatctccacggcggtcgccgcctccgc 53283973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 5234735 - 5234611
Alignment:
Q  2 gtgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaa 101  Q
    |||||||||||| | |||||||||||||||||| ||||||| |||||||||| ||| |||| | ||||||||||||||||||||||||| ||||||||||    
T  5234735 gtgtcatgtgtgtttattgttgcatagtatgtgttgtgcatctgctcaatatattctaccgaagactagttttattagattttttgaaccatcggattaa 5234636  T
Q  102 gcacctcactagtgttattgtgttg 126  Q
    | ||||||||||| |||||||||||    
T  5234635 gtacctcactagtcttattgtgttg 5234611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 53284271 - 53284152
Alignment:
Q  3 tgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaag 102  Q
    |||||||||||||||||||||||||||||||||||||||| |  || ||||||||||  ||| | |||||||||||| |||||||||||||| |||||||    
T  53284271 tgtcatgtgtgctgattgttgcatagtatgtgatgtgcatctagtcgatatgttccagtgtagattagttttattaggttttttgaactatcagattaag 53284172  T
Q  103 cacctcactagtgttattgt 122  Q
    ||||| ||||||||||||||    
T  53284171 caccttactagtgttattgt 53284152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 29702681 - 29702736
Alignment:
Q  209 attgttttagatcctaactaattaattttgattattctttcatgaacgtccaccat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29702681 attgttttagatcctaactaattaattttgattattctttcatgaacgtccaccat 29702736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 55406348 - 55406267
Alignment:
Q  44 tgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaagcacctcactagtgttattgtgttg 126  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||| ||| |||||||   |||||||||||||||||||||    
T  55406348 tgctcaatatgttc-accgtagactaattttattagattttttgaacaatcagattaagtgtctcactagtgttattgtgttg 55406267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 33213490 - 33213604
Alignment:
Q  3 tgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaag 102  Q
    |||||||||||||||||||||||| ||||||  |||| |  |||||||||||||||| ||||          ||||  |||||||||| ||| ||||||     
T  33213490 tgtcatgtgtgctgattgttgcatggtatgtattgtgtacctgctcaatatgttccatcgta---------gattatcttttttgaaccatcagattaaa 33213580  T
Q  103 cacctcactagtgttattgtgttg 126  Q
    ||| ||||||||||||||||||||    
T  33213581 cacatcactagtgttattgtgttg 33213604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 39831356 - 39831400
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgtt 125  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  39831356 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 39831400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 29835719 - 29835674
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgttg 126  Q
    |||||||||| ||| |||||| |||||||||||||||||| |||||    
T  29835719 ttttttgaaccatcagattaaacacctcactagtgttattttgttg 29835674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 15530135 - 15530262
Alignment:
Q  3 tgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcgg----at 98  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| |    ||    
T  15530135 tgtcatgtgtgctgattgttgcatagtatgtgatgtgcatctgctcgatatgttccaccgtagactagttttattagattttttgaactatcagatttat 15530234  T
Q  99 taagcacctcactagtgttattgtgttg 126  Q
    ||| |||||||||||| |||||||||||    
T  15530235 taaacacctcactagtattattgtgttg 15530262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 42063076 - 42063201
Alignment:
Q  1 cgtgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggatta 100  Q
    ||||||||||||| ||||||||| || ||||||  | || |  || | |||||||||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  42063076 cgtgtcatgtgtgttgattgttgaatggtatgtcgtatgtacctgttaaatatgttccaccgtagactagctttattagattttttgaaccatcagatta 42063175  T
Q  101 agcacctcactagtgttattgtgttg 126  Q
    |||| |||||||||||||||||||||    
T  42063176 agcatctcactagtgttattgtgttg 42063201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 47028173 - 47028298
Alignment:
Q  1 cgtgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggatta 100  Q
    ||||| ||||||| ||||||||| || ||||||  | || |  |||| |||||||||||||||| ||||| ||||||| ||||||||||| ||| |||||    
T  47028173 cgtgtaatgtgtgttgattgttgaatggtatgtagtatgtacctgctaaatatgttccaccgtagactagctttattatattttttgaaccatcagatta 47028272  T
Q  101 agcacctcactagtgttattgtgttg 126  Q
    ||||||||||||||||||||||||||    
T  47028273 agcacctcactagtgttattgtgttg 47028298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 15530356 - 15530411
Alignment:
Q  209 attgttttagatcctaactaattaattttgattattctttcatgaacgtccaccat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15530356 attgttttagatcctaactaattaattttgattattctttcatgaacgtccaccat 15530411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 45988260 - 45988314
Alignment:
Q  72 tttattagattttttgaactatcggattaagcacctcactagtgttattgtgttg 126  Q
    ||||||||||||||| ||| |||  ||||||||||||||||||||||||||||||    
T  45988260 tttattagattttttaaaccatcaaattaagcacctcactagtgttattgtgttg 45988314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 28683010 - 28682959
Alignment:
Q  75 attagattttttgaactatcggattaagcacctcactagtgttattgtgttg 126  Q
    ||||| |||||||||| |||||||||||||  ||||||||||||||||||||    
T  28683010 attagcttttttgaaccatcggattaagcaaatcactagtgttattgtgttg 28682959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 4922449 - 4922399
Alignment:
Q  76 ttagattttttgaactatcggattaagcacctcactagtgttattgtgttg 126  Q
    ||||||||||||||  |||||||||| ||| ||||||||||||||||||||    
T  4922449 ttagattttttgaatcatcggattaaacacttcactagtgttattgtgttg 4922399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 27296228 - 27296178
Alignment:
Q  76 ttagattttttgaactatcggattaagcacctcactagtgttattgtgttg 126  Q
    ||||||||||||||  |||||||||| ||| ||||||||||||||||||||    
T  27296228 ttagattttttgaatcatcggattaaacacttcactagtgttattgtgttg 27296178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 55917556 - 55917600
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgtt 125  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  55917556 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 55917600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 20135360 - 20135320
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattg 121  Q
    |||||||||||||| |||||||||  |||||||||||||||    
T  20135360 ttttttgaactatcagattaagcaattcactagtgttattg 20135320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 47329674 - 47329550
Alignment:
Q  2 gtgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaa 101  Q
    |||||||||||| | |||||||||||||||||| ||||||| |||||||||| ||| |||| | ||||||||||||||||||||||||| ||||||||||    
T  47329674 gtgtcatgtgtgtttattgttgcatagtatgtgttgtgcatctgctcaatatattctaccgaagactagttttattagattttttgaaccatcggattaa 47329575  T
Q  102 gcacctcactagtgttattgtgttg 126  Q
    | ||||||||||| |||||||||||    
T  47329574 gtacctcactagtcttattgtgttg 47329550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 34095862 - 34095737
Alignment:
Q  1 cgtgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggatta 100  Q
    ||||||||||||| ||||||||  || ||||||  | || |  |||| |||||||||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  34095862 cgtgtcatgtgtgttgattgttaaatggtatgtcgtttgtacctgctaaatatgttccaccgtagactagctttattagattttttgaaccatcagatta 34095763  T
Q  101 agcacctcactagtgttattgtgttg 126  Q
    |||| |||||||||||||||||||||    
T  34095762 agcatctcactagtgttattgtgttg 34095737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 29263367 - 29263282
Alignment:
Q  41 atttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaagcacctcactagtgttattgtgttg 126  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||| |||  |||||||||||||||  |||||||||||||    
T  29263367 atttgctcaatatgttccaccatagactagttttattagattttttgaaccatcaaattaagcacctcactgttgttattgtgttg 29263282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 6444170 - 6444048
Alignment:
Q  3 tgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaag 102  Q
    ||||||||||| ||||||||| || ||||||  | || |  |||| |||||||| || |||||||||  ||||||| ||||||| ||| |||  ||||||    
T  6444170 tgtcatgtgtgttgattgttgaatggtatgtagtatgtacctgctaaatatgtttcatcgtaaactaactttattaaatttttt-aaccatcaaattaag 6444072  T
Q  103 cacctcactagtgttattgtgttg 126  Q
    ||||||||||||||||||||||||    
T  6444071 cacctcactagtgttattgtgttg 6444048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 19465382 - 19465332
Alignment:
Q  76 ttagattttttgaactatcggattaagcacctcactagtgttattgtgttg 126  Q
    ||||||||||||||  |||||||||| ||| ||||||||||||||||||||    
T  19465382 ttagattttttgaatcatcggattaaacacttcactagtgttattgtgttg 19465332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 45974372 - 45974328
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgtt 125  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  45974372 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 45974328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 29245213 - 29245169
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgtt 125  Q
    |||||||||||||| |||||||||  |||||||||||| ||||||    
T  29245213 ttttttgaactatcagattaagcaattcactagtgttactgtgtt 29245169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 37080735 - 37080611
Alignment:
Q  2 gtgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaa 101  Q
    |||||||||||| | |||||||||||||||||| ||||||| |||||||||| ||| |||| | ||||||||||||||||||||||||| ||||||||||    
T  37080735 gtgtcatgtgtgtttattgttgcatagtatgtgttgtgcatctgctcaatatattctaccgaagactagttttattagattttttgaaccatcggattaa 37080636  T
Q  102 gcacctcactagtgttattgtgttg 126  Q
    | ||||||||||| |||||||||||    
T  37080635 gtacctcactagtcttattgtgttg 37080611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 7091112 - 7090997
Alignment:
Q  9 gtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaagcacctc 108  Q
    ||||| ||||||||| ||  ||||| ||||| |  |||||||||| |||||||||| ||||  ||||||||||||||||||| |||  ||||| ||||||    
T  7091112 gtgtgttgattgttgaatgttatgtaatgtgtacctgctcaatatattccaccgtagactaactttattagattttttgaaccatcaaattaatcacctc 7091013  T
Q  109 actagtgttattgtgt 124  Q
     |||  ||||||||||    
T  7091012 gctaaagttattgtgt 7090997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 33751587 - 33751686
Alignment:
Q  9 gtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaagcacctc 108  Q
    ||||| ||||||||| ||  ||||| ||||| |  |||||||||| |||||||||| ||||  ||||||||||||||||||| |||  ||||| ||||||    
T  33751587 gtgtgttgattgttgaatgttatgtaatgtgtacctgctcaatatattccaccgtagactaactttattagattttttgaaccatcaaattaatcacctc 33751686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 15332682 - 15332638
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgtt 125  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  15332682 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 15332638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 16431800 - 16431756
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgtt 125  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  16431800 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 16431756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 17692543 - 17692499
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgtt 125  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  17692543 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 17692499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 30778411 - 30778475
Alignment:
Q  47 tcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaagcacctcact 111  Q
    |||||||||| ||||||| | || |||||||||||| ||| ||||||  ||||||||||||||||    
T  30778411 tcaatatgttgcaccgtagattaattttattagattgtttaaactattagattaagcacctcact 30778475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 37259826 - 37259870
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgtt 125  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  37259826 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 37259870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 14101911 - 14101861
Alignment:
Q  76 ttagattttttgaactatcggattaagcacctcactagtgttattgtgttg 126  Q
    ||||||||||||||  |||||||||| ||  ||||||||||||||||||||    
T  14101911 ttagattttttgaatcatcggattaaacagttcactagtgttattgtgttg 14101861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 14805728 - 14805772
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgtt 125  Q
    |||||||||||||| |||||| ||  |||||||||||||||||||    
T  14805728 ttttttgaactatcagattaaacaattcactagtgttattgtgtt 14805772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 4181252 - 4181128
Alignment:
Q  2 gtgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaa 101  Q
    |||||||||||| | |||||||||||||||||| ||||||| |||||||| | ||| |||| | |||| |||||||||||||||||||| ||||||||||    
T  4181252 gtgtcatgtgtgtttattgttgcatagtatgtgttgtgcatctgctcaatctattctaccgaagactaattttattagattttttgaaccatcggattaa 4181153  T
Q  102 gcacctcactagtgttattgtgttg 126  Q
    | ||||||||||| |||||||||||    
T  4181152 gtacctcactagtcttattgtgttg 4181128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 7124409 - 7124531
Alignment:
Q  3 tgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaag 102  Q
    ||||||||||| ||||||||| || ||||||  | || |  |||| ||||||||||| |||| ||||  ||||||||||||||||||| |||  ||||||    
T  7124409 tgtcatgtgtgttgattgttgaatggtatgtagtatgtacctgctaaatatgttccatcgtagactaactttattagattttttgaaccatcaaattaag 7124508  T
Q  103 cacctcactagtgttattgtgtt 125  Q
    |||||||||||||||||||||||    
T  7124509 cacctcactagtgttattgtgtt 7124531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 945036 - 944991
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgttg 126  Q
    |||||||||| ||| |||||||||||||| ||||||||||||||||    
T  945036 ttttttgaaccatcagattaagcacctcattagtgttattgtgttg 944991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 45319680 - 45319805
Alignment:
Q  1 cgtgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggatta 100  Q
    |||||||| |||| ||||||||| || ||||||  | || |  |||| |||||||||||||||| ||||| |||||||||||||||||||||||  ||||    
T  45319680 cgtgtcatttgtgttgattgttgaattgtatgttgtatgtacctgctaaatatgttccaccgtagactagctttattagattttttgaactatcaaatta 45319779  T
Q  101 agcacctcactagtgttattgtgttg 126  Q
    ||||||||||||||||||||||||||    
T  45319780 agcacctcactagtgttattgtgttg 45319805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 12983475 - 12983425
Alignment:
Q  75 attagattttttgaactatcggattaagcacctcactagtgttattgtgtt 125  Q
    ||||| |||||||||||||| |||||||||  |||||||||||||||||||    
T  12983475 attagcttttttgaactatcagattaagcaattcactagtgttattgtgtt 12983425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 39242561 - 39242516
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgttg 126  Q
    |||||||||| ||| |||||| ||||||||||||||||||||||||    
T  39242561 ttttttgaaccatcagattaaacacctcactagtgttattgtgttg 39242516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 49410461 - 49410416
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgttg 126  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||||    
T  49410461 ttttttgaaccatcagattaagcacctcactagtgctattgtgttg 49410416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 45346419 - 45346463
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgtt 125  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  45346419 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 45346463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 22105547 - 22105583
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgtt 117  Q
    |||||||||||||| |||||||||| |||||||||||    
T  22105547 ttttttgaactatcagattaagcacatcactagtgtt 22105583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 7052 - 7177
Alignment:
Q  1 cgtgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggatta 100  Q
    ||||| ||||||| ||||||||| || ||||||  | || |  |||| |||||||||||||||| ||||| ||||||| ||||||||||| ||| |||||    
T  7052 cgtgtaatgtgtgttgattgttgaatggtatgtagtatgtacctgctaaatatgttccaccgtagactagctttattatattttttgaaccatcagatta 7151  T
Q  101 agcacctcactagtgttattgtgttg 126  Q
    ||||||||||||||||||||||||||    
T  7152 agcacctcactagtgttattgtgttg 7177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 1955 - 1832
Alignment:
Q  3 tgtcatgtgtgctgattgttgcatagtatgtgatgtgcatttgctcaatatgttccaccgtaaactagttttattag-attttttgaactatcggattaa 101  Q
    ||||||||||| ||||||||| || ||||||  | || |  |||| ||||||||||| |||| ||||  |||||||| ||||||||||| |||  |||||    
T  1955 tgtcatgtgtgttgattgttgaatggtatgtagtatgtacctgctaaatatgttccatcgtagactaactttattagtattttttgaaccatcaaattaa 1856  T
Q  102 gcacctcactagtgttattgtgtt 125  Q
    ||||||||||||||||||||||||    
T  1855 gcacctcactagtgttattgtgtt 1832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 25247 - 25291
Alignment:
Q  81 ttttttgaactatcggattaagcacctcactagtgttattgtgtt 125  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  25247 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 25291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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