View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20556_low_24 (Length: 292)
Name: NF20556_low_24
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 2937660 - 2937407
Alignment:
| Q |
1 |
atagaaatgtatgcttatatatacatttaagatgttgttcatctgattctatgtaaacacaaatccatgtaactattttcatcatcatgcttgtactgaa |
100 |
Q |
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| T |
2937660 |
atagaaatgtttgcttatatatacatttaagatgttgttcatctgattctatgtaaacacactt------aactattttcatcatcatgcttgtactgaa |
2937567 |
T |
|
| Q |
101 |
attgtgcagctattatattttcacacaaatccatgcaatgcatttatttactgcatgtggggccactttcgaagttgaaaataaaagcaagcaactaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2937566 |
attgtgcagctattatattttcacacaaatccatgcaatgcatttatttactgcatgtggggccactttcgaacttgaaaataaaagcaagcaactaatt |
2937467 |
T |
|
| Q |
201 |
aaagttcatatcaatatactagtatcaatcaattctgataattattgcatgtgttaattctccgtatcagttgc |
274 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2937466 |
aatgttcatat--------------caatcaattctgataattattgcatgtgttaattctccgtatcagttgc |
2937407 |
T |
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