View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20556_low_27 (Length: 267)
Name: NF20556_low_27
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 106 - 250
Target Start/End: Complemental strand, 20590715 - 20590571
Alignment:
| Q |
106 |
cttgtgatactattcttcacagtatagacatatgggatctttttctacaccctttcctttttcaaagaatcctgctgctgcaaattcaaaagtcgaagct |
205 |
Q |
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| T |
20590715 |
cttgtgatactattcttcacagtatagacatatgggatctttttctacaccctttcctttttcaaagaatcctgctgctgcaaatacaaaagttgaagct |
20590616 |
T |
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| Q |
206 |
aaatccactttgaaacatgtggcacgtgagacagaatcatctgat |
250 |
Q |
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| T |
20590615 |
aaatccactttgaaacatgtggcacatgagacagaatcatctgat |
20590571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20590826 - 20590775
Alignment:
| Q |
1 |
taattaataaatatattttcataattagtgaagatgaaagttctaactctca |
52 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20590826 |
taattaataaatatgttttcataattagtgaagatgaaagttctaactctca |
20590775 |
T |
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