View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20556_low_31 (Length: 239)
Name: NF20556_low_31
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 34118574 - 34118410
Alignment:
| Q |
13 |
aaaatttagattatcccaagaattattatcaaaatggttataaaaattgttataaaaaatgattgtacaaattatgggttatcgactgatgcaacatcaa |
112 |
Q |
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| T |
34118574 |
aaaatttagattatcccaagaattattatcaaaatggttataaaaattgttatcaaaa-tggttgtacaaattatgggttatcgactgatgcaacatcaa |
34118476 |
T |
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| Q |
113 |
ccgatcgacactaacaaaacaattgaaaaatgaattttctatcttttgaaaaatctaaaacttgat |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34118475 |
ccgatcgacactaacaaaacaattgaaaaatgaattttctatcttttgaaaaatctaaaacttgat |
34118410 |
T |
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