View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20556_low_35 (Length: 229)

Name: NF20556_low_35
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20556_low_35
NF20556_low_35
[»] chr8 (2 HSPs)
chr8 (18-229)||(15838122-15838334)
chr8 (166-229)||(3648913-3648977)
[»] chr7 (4 HSPs)
chr7 (163-229)||(8394106-8394173)
chr7 (165-229)||(36630799-36630864)
chr7 (166-229)||(5555471-5555535)
chr7 (166-229)||(3114215-3114279)
[»] chr2 (2 HSPs)
chr2 (166-229)||(42439970-42440034)
chr2 (166-229)||(35962699-35962763)
[»] chr4 (2 HSPs)
chr4 (163-229)||(36382464-36382531)
chr4 (166-229)||(43355888-43355952)
[»] chr3 (1 HSPs)
chr3 (163-229)||(34084241-34084308)
[»] chr6 (2 HSPs)
chr6 (59-115)||(24008412-24008468)
chr6 (166-229)||(34948877-34948941)
[»] chr5 (3 HSPs)
chr5 (166-229)||(10033911-10033975)
chr5 (166-229)||(13817961-13818025)
chr5 (166-229)||(39434680-39434744)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 15838122 - 15838334
Alignment:
Q  18 atggtgttggtcagtcatcgcatcaccagtctcgtggaagtcatggattccaggaagagaagtagaagaggaggtcaagttgaggaaagtgagagggatt 117  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15838122 atggtgttggtcagtcatcgcacctccagtctcgtggaagtcatggattccaggaagagaagtagaagaggaggtcaagttgaggaaagtgacagggatt 15838221  T
Q  118 ccgggaagagaaaaacgattcaaacgttgagaagtgattcaaggtagtggcggttctaccgtatggcggcccc-ggcaggcgcccggggtcggtcgataa 216  Q
    || |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||| ||| | | |||||| ||| | |||||    
T  15838222 ccaggaagagaaaaacgattcaaacgttgagaagtgattcaaggcggtggcggttctaccgtatggcgaccccgggcggtcacccgggctcgattgataa 15838321  T
Q  217 ttttttcacatta 229  Q
    ||||| |||||||    
T  15838322 tttttgcacatta 15838334  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 3648977 - 3648913
Alignment:
Q  166 ggcggttctaccgtatggcggccccgg-caggcgcccggggtcggtcgataattttttcacatta 229  Q
    ||||||||||||||||||||  || || ||| |||||||| ||| ||||||||||||||||||||    
T  3648977 ggcggttctaccgtatggcgatccgggacagtcgcccgggctcgatcgataattttttcacatta 3648913  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 8394106 - 8394173
Alignment:
Q  163 agtggcggttctaccgtatggcggcccc-ggcaggcgcccggggtcggtcgataattttttcacatta 229  Q
    ||||||||||||||||||||||| |||| ||| | |||||||| ||| |||||||||||| |||||||    
T  8394106 agtggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacatta 8394173  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 36630799 - 36630864
Alignment:
Q  165 tggcggttctaccgtatggcggccccgg-caggcgcccggggtcggtcgataattttttcacatta 229  Q
    ||||||||||||||||||||| |||||| | | |||||||| ||| |||||||||||| |||||||    
T  36630799 tggcggttctaccgtatggcgaccccggacggtcgcccgggctcgatcgataatttttgcacatta 36630864  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 5555471 - 5555535
Alignment:
Q  166 ggcggttctaccgtatggcggcccc-ggcaggcgcccggggtcggtcgataattttttcacatta 229  Q
    |||||||||||||||||||| |||| ||| | |||||||| ||| |||||||||||| |||||||    
T  5555471 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacatta 5555535  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 3114279 - 3114215
Alignment:
Q  166 ggcggttctaccgtatggcggccccggcagg-cgcccggggtcggtcgataattttttcacatta 229  Q
    |||||||||||||||||| | ||||||  || |||||||| ||| |||||||||||| |||||||    
T  3114279 ggcggttctaccgtatggtgaccccggacggtcgcccgggctcgatcgataatttttgcacatta 3114215  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 42439970 - 42440034
Alignment:
Q  166 ggcggttctaccgtatggcggcccc-ggcaggcgcccggggtcggtcgataattttttcacatta 229  Q
    |||||||||||||||||||| |||| ||| | |||||||| ||| |||||||||||| |||||||    
T  42439970 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacatta 42440034  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 35962699 - 35962763
Alignment:
Q  166 ggcggttctaccgtatggcggcccc-ggcaggcgcccggggtcggtcgataattttttcacatta 229  Q
    |||||||||||||||||||| |||| ||| | || ||||| ||| |||||||||||| |||||||    
T  35962699 ggcggttctaccgtatggcgaccccaggcggtcgtccgggctcgatcgataatttttgcacatta 35962763  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 36382531 - 36382464
Alignment:
Q  163 agtggcggttctaccgtatggcggcccc-ggcaggcgcccggggtcggtcgataattttttcacatta 229  Q
    ||||||||||||||||||||||| |||| ||| | |||||||| ||| || ||||||||| |||||||    
T  36382531 agtggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatccataatttttgcacatta 36382464  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 43355888 - 43355952
Alignment:
Q  166 ggcggttctaccgtatggcggcccc-ggcaggcgcccggggtcggtcgataattttttcacatta 229  Q
    |||||||| ||||| | ||| |||| ||||| |||||||| |||||||||||||||| |||||||    
T  43355888 ggcggttccaccgtgtagcgaccccaggcagtcgcccgggctcggtcgataatttttgcacatta 43355952  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 34084308 - 34084241
Alignment:
Q  163 agtggcggttctaccgtatggcggcccc-ggcaggcgcccggggtcggtcgataattttttcacatta 229  Q
    ||||||||||||||||||||||| |||| ||| | |||||||  ||| |||||||||||| |||||||    
T  34084308 agtggcggttctaccgtatggcgaccccgggcggtcgcccggactcgatcgataatttttgcacatta 34084241  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 24008412 - 24008468
Alignment:
Q  59 catggattccaggaagagaagtagaagaggaggtcaagttgaggaaagtgagaggga 115  Q
    |||||||| ||||||||||||||||| |  || ||||||||||||||  ||||||||    
T  24008412 catggatttcaggaagagaagtagaaaatcagttcaagttgaggaaaaagagaggga 24008468  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 34948941 - 34948877
Alignment:
Q  166 ggcggttctaccgtatggcggcccc-ggcaggcgcccggggtcggtcgataattttttcacatta 229  Q
    |||||||||||||||||||| |||| ||| | ||||| || ||| |||||||||||| |||||||    
T  34948941 ggcggttctaccgtatggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacatta 34948877  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 10033911 - 10033975
Alignment:
Q  166 ggcggttctaccgtatggcggccccgg-caggcgcccggggtcggtcgataattttttcacatta 229  Q
    |||||||||||||||||||| |||||| |   |||||||| ||| |||||||||||| |||||||    
T  10033911 ggcggttctaccgtatggcgaccccggacgatcgcccgggctcgatcgataatttttgcacatta 10033975  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 13817961 - 13818025
Alignment:
Q  166 ggcggttctaccgtatggcggcccc-ggcaggcgcccggggtcggtcgataattttttcacatta 229  Q
    |||||||||||||||||||| |||| ||| | ||| |||| ||| |||||||||||| |||||||    
T  13817961 ggcggttctaccgtatggcgaccccgggcggtcgctcgggctcgatcgataatttttgcacatta 13818025  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 39434680 - 39434744
Alignment:
Q  166 ggcggttctaccgtatggcggccccggcagg-cgcccggggtcggtcgataattttttcacatta 229  Q
    |||||||||||||| ||||| ||| ||  || |||||||| ||| ||||||||||||||||||||    
T  39434680 ggcggttctaccgtgtggcgaccctgggcggtcgcccgggctcgatcgataattttttcacatta 39434744  T

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