View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20556_low_7 (Length: 670)
Name: NF20556_low_7
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 315
Target Start/End: Original strand, 5024457 - 5024759
Alignment:
| Q |
15 |
cacagaaaaacaaccatcttaaatatatcataataaatattcgaccccatcaaccttgtcactatcatatgg--gttttatgtcttatttcttcttcact |
112 |
Q |
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| T |
5024457 |
cacagaaaaacaaccatcttaaatatatcataataaatattcgaccccatcaaccttgtcactatcatatggtggtgttatgtcttatttcttcttcact |
5024556 |
T |
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| Q |
113 |
cattctaaagtcctctacaataagcttttatgattgctctagagcagagggcttaggaaggagagaaagtgaaaatacgacatatatattgaaatcaatg |
212 |
Q |
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| T |
5024557 |
cattctaaagtcctctacaataagattttatgattgctctagatcagagggcttaggaaggagagaaagtgaaaatacgacatatatattgaaatcaatg |
5024656 |
T |
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| Q |
213 |
cgagaattagggttctttgaacacacatcttcaaactagatatgctttggaaaatagaacttctatatatactaacaaacttttgaactactaataatat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
5024657 |
cgagaattagggttctttgaacacacatcttcaaactagatatgctttggaaaatagaacttctatagatacgaacaaacttttgaactactaataatat |
5024756 |
T |
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| Q |
313 |
cat |
315 |
Q |
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||| |
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| T |
5024757 |
cat |
5024759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 398 - 608
Target Start/End: Original strand, 5024843 - 5025069
Alignment:
| Q |
398 |
taattgagatttaacaggacaaaacaataaaacaagacatttgaacatgaaaaagaactcaaaagcaaacattagcagtgaaatatttcctctccttact |
497 |
Q |
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| T |
5024843 |
taattgagatttaacaggacaaaacaataaaacaagacatttgaatatgaaaaagaactcaaaagcaaacattagcagtgaaatatttcctctccttact |
5024942 |
T |
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| Q |
498 |
acttaatcagattgcaagagaagacaagggagtatggtttatacttcaccgacgctctcttgag----------------acaaggcagtgtttcaaagg |
581 |
Q |
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| T |
5024943 |
acttcatcagattgcaagagaagacaagggagtatggtttatacttcaccgacgctctcttgagatgttatttgaaaaatataaggcagtgtttcaaagg |
5025042 |
T |
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| Q |
582 |
atgaatgaagtgttacttatatatatg |
608 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
5025043 |
atgaattaagtgttacttatatatatg |
5025069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 615 - 652
Target Start/End: Original strand, 29494742 - 29494779
Alignment:
| Q |
615 |
actgatacccataccaccataggtggcataccactcat |
652 |
Q |
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| T |
29494742 |
actgatacccataccaccataggtggcataccactcat |
29494779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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