View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20556_low_8 (Length: 488)
Name: NF20556_low_8
Description: NF20556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20556_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 41921197 - 41921669
Alignment:
| Q |
1 |
tctaaatagtaaatgttatatggtacttctacttacctacatttgttatctttgttctcaaatatcaaataggattcacttgttagaacttggcgttgga |
100 |
Q |
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| T |
41921197 |
tctaaatagtaaatgttatatggtacttctacttacctacatttgttatctttgttctcaaatatcaaataggattcacttgttagaacttggcgttgga |
41921296 |
T |
|
| Q |
101 |
atgtatctcttctttatcggctgctacgatgtcatgtttgggaaaaaccacttcttcatctttctctttatccaagcaatcgccttcttcatcatggcat |
200 |
Q |
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| T |
41921297 |
atgtatctcttctttatcggctgctacgatgtcatgtttgggaaaaaccacttcttcatctttctctttatccaagcaatcgccttcttcatcatggcat |
41921396 |
T |
|
| Q |
201 |
ttggatatgtcggaaccttcgttcccaactgaagaaggacttggtgattcttcaatcagcaatttcatcttctgttgattcaatattgaacacgttgtaa |
300 |
Q |
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| T |
41921397 |
ttggatatgtcggaaccttcgttcccaactgaagaaggacttggtgattcttcaatcagcaatttcatcttctgttgattcaatattgaacacgttgtaa |
41921496 |
T |
|
| Q |
301 |
tatattgcgttttcggcatacttctcgtaaattatagcttgttagtttaaaggaaaagattgttattctttgaggttttgcataagggtcagtgactctt |
400 |
Q |
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| T |
41921497 |
tatattgcgttttcagcatacttctcgtaaattatagcttgttagtttaaaggaaaagattgttattctttgaggttttgcataagggtcagtgactctt |
41921596 |
T |
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| Q |
401 |
gaagagtttagttttcttgtgaatattcaaaaaagacagaaaatatatgaagtccttctcatggaagataagt |
473 |
Q |
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| T |
41921597 |
gaagagtttagttttcttgtgaatattcaaaaaagacagaaaatatatgaagtccttctcatggaagataagt |
41921669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 26829412 - 26829252
Alignment:
| Q |
70 |
taggattcacttgttagaacttggcgttggaatgtatctcttctttatcggctgctacgatgtcatgtttgggaaaaaccacttcttcatctttctcttt |
169 |
Q |
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|||||||||| |||||||||||| |||||| | || ||| |||| |||||||| ||| | |||| ||||||||| ||||||||||| || || | |
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| T |
26829412 |
taggattcacatgttagaacttgttgttggattctacctcctcttatgtggctgctatgatcttatgtatgggaaaaatcacttcttcatattcctatac |
26829313 |
T |
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| Q |
170 |
atccaagcaatcgccttcttcatcatggcatttggatatgtcggaaccttcgttcccaact |
230 |
Q |
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| T |
26829312 |
atccaagcgtttgctttcttcatcatggcatttggatatgttggcacttttgttcccaact |
26829252 |
T |
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