View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20557_high_1 (Length: 546)
Name: NF20557_high_1
Description: NF20557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20557_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 7 - 523
Target Start/End: Complemental strand, 22124292 - 22123777
Alignment:
| Q |
7 |
tcgaagaaaataatcatataacagaaggaaaaataagagacattattttaggaaatacataaagcttgtattttgatggctaaaaagtaaatatcaaaaa |
106 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22124292 |
tcgaacaaaataatcatataacagaaggaaaaataagagacattattttaggaaatacataaagcttgtattttgatggctaaaaagtaaatatcaaaa- |
22124194 |
T |
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| Q |
107 |
gaagattgtatccagttatatgaaagaaaaaacacaccttaattttcctgaagtaggattgagatttcaacttcatgagtgtcgaaagacatctccatca |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22124193 |
gaagattgtatccagttatatgaaagaaaaaacacaccttaattttcctgaagtaggattgagatttcaacttcatgagtgtcgaaagacatctccatcg |
22124094 |
T |
|
| Q |
207 |
atttctacagggggaacatgctcgacgacagccatcccatgcacaaatctagcattcatatcccaaatgctgagaacttgaagcttctctaagttctgaa |
306 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22124093 |
atttctacaaggggaacatgctcgacgacagccatcccatgcacaaatctagcatgcatatcccaaatgctgagaacttgatgcttctctaagttctgaa |
22123994 |
T |
|
| Q |
307 |
ttccagtggggaccctctccagttggggaatacttcatagctcgagattttgtagtgaaaccaatgctcctttttcgataacaattgaattcaagtttct |
406 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22123993 |
ttccagtggagaccctctccagttggggaatacttcatagctcgagattttgtagtgaaaccaatgctcctttttcgataacaattgaattcaagtttct |
22123894 |
T |
|
| Q |
407 |
catttgagcatggaatagtccttttagtttctgaaatcctccatcttggaattggaaacttgtgccttcataagcatagccaatgattgagagggacaac |
506 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
22123893 |
catttgagcatggaatagtccttttagtttctgaaaccctccatcttggaattgcaaacttgtgctttcataagcatagccaatgatcgagagggacaac |
22123794 |
T |
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| Q |
507 |
aagttttgcaaattttg |
523 |
Q |
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| T |
22123793 |
aagttttgcaaattttg |
22123777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 522
Target Start/End: Original strand, 22619428 - 22619479
Alignment:
| Q |
471 |
ccttcataagcatagccaatgattgagagggacaacaagttttgcaaatttt |
522 |
Q |
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| T |
22619428 |
ccttcataagcattgttgatgattgagagggacaacaagttttgcagatttt |
22619479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 368 - 512
Target Start/End: Original strand, 2303930 - 2304076
Alignment:
| Q |
368 |
caatgctcctttttcgataacaattgaattcaagtttctcatttgagca-tgga-atagtccttttagtttctgaaatcctccatcttggaattggaaac |
465 |
Q |
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|||||||||||| ||||||||||||||||||||||| || || || || | ||||| ||||||| || ||||| |||||||| || || || |||| |
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| T |
2303930 |
caatgctcctttatcgataacaattgaattcaagttggacaagtgtccaatgtatatagttcttttagattttgaaaacctccatcatgaaaatgtaaac |
2304029 |
T |
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| Q |
466 |
ttgtgccttcataagcatagccaatgattgagagggacaacaagttt |
512 |
Q |
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| T |
2304030 |
ttttgccttcataagcattatagatgattgagagggacaacaagttt |
2304076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 512
Target Start/End: Complemental strand, 34984524 - 34984456
Alignment:
| Q |
444 |
cctccatcttggaattggaaacttgtgccttcataagcatagccaatgattgagagggacaacaagttt |
512 |
Q |
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|||||||| || || || |||||| |||||||||||||| | |||||||||||||||||||||||| |
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| T |
34984524 |
cctccatcatgaaaatgtaaactttcgccttcataagcattggagatgattgagagggacaacaagttt |
34984456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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