View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20557_high_11 (Length: 306)
Name: NF20557_high_11
Description: NF20557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20557_high_11 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 4864500 - 4864225
Alignment:
| Q |
13 |
aagaatattgcattcaaatcaacccaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaa |
112 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4864500 |
aagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaa |
4864401 |
T |
|
| Q |
113 |
tggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggactac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4864400 |
tggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacgaactac |
4864301 |
T |
|
| Q |
213 |
caagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccaccgggtgatg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4864300 |
caagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccaccgggtgatg |
4864225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 4696710 - 4696974
Alignment:
| Q |
13 |
aagaatattgcattcaaatcaacccaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaa |
112 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| || || ||||| || ||||||||||||||||| |||||||| |
|
|
| T |
4696710 |
aagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattcc---cagcaacataaaccagtcaaatccttattatgctttcattaa |
4696806 |
T |
|
| Q |
113 |
tggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggactac |
212 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||| ||||||| |
|
|
| T |
4696807 |
cggaatagaagttgtgtcaatgccttcttttctctattacacaaacctcagtgacccaaaatatcatttgatatcacttgacttagacaacagggactac |
4696906 |
T |
|
| Q |
213 |
caagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccacc |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
4696907 |
caagttcttaacgacaaagcgttagagacggtttatagagtcaatgtgggtggcaatcaagttccacc |
4696974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 4711592 - 4711856
Alignment:
| Q |
13 |
aagaatattgcattcaaatcaacccaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaa |
112 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||| || || |||||||| ||||||||||||||||| |||||||| |
|
|
| T |
4711592 |
aagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcca---aacaacataaatcattcaaatccttattatgctttcattaa |
4711688 |
T |
|
| Q |
113 |
tggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggactac |
212 |
Q |
| |
|
||||| ||| | |||||||||||||||||||| |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
4711689 |
cggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaatac |
4711788 |
T |
|
| Q |
213 |
caagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccacc |
280 |
Q |
| |
|
||| ||| |||||||||||| || || | ||| ||||||||||| || ||| ||| |||||||||||| |
|
|
| T |
4711789 |
caaattcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccacc |
4711856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 4673278 - 4673008
Alignment:
| Q |
13 |
aagaatattgcattcaaatcaacccaaatgagaagctaaacataactttcattccggccaataat-ataaatcaatcaaatccttattatgccttcatta |
111 |
Q |
| |
|
|||||| ||| || |||||||| || ||||||||||||||||||| ||||||||| || || || || |||||||| | | ||||| ||||||| |
|
|
| T |
4673278 |
aagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattcc----aagcatcatgaacaaatcaaatgttaaatatgctttcatta |
4673183 |
T |
|
| Q |
112 |
atggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggacta |
211 |
Q |
| |
|
| ||||| ||| | ||||| |||||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||||| || |
|
|
| T |
4673182 |
acggaatcgaaattgtgtcaatgccttcttttctctattacacaaacctcagtgacccaaattatcatttgaaatcacttgacttagacaacacggaata |
4673083 |
T |
|
| Q |
212 |
ccaagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccaccgggtga |
286 |
Q |
| |
|
|||| ||| |||||| ||||| || || | ||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
4673082 |
ccaaattcataacgaaaaagctttggaaatggtttatagagtcaacgttggtgaaagtcaagttccaccgggtga |
4673008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 4637432 - 4637168
Alignment:
| Q |
13 |
aagaatattgcattcaaatcaacccaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaa |
112 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||| || | ||||| ||||||||||||| |||||| || ||||| |
|
|
| T |
4637432 |
aagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcct---aacagcataaaccaatcaaatccttgttatgcttttattaa |
4637336 |
T |
|
| Q |
113 |
tggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggactac |
212 |
Q |
| |
|
|| || ||||| ||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||| || |||||| || ||||||| ||| |
|
|
| T |
4637335 |
cgggatcgaagttgtgtcaatgccttcttttctctattacacaaacctcaatgacccaaattactatttgaaaccagttgactcagagtacacggaatac |
4637236 |
T |
|
| Q |
213 |
caagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccacc |
280 |
Q |
| |
|
| | ||| ||| |||||||| || |||| ||||||||||||||| || ||| ||| |||||||||||| |
|
|
| T |
4637235 |
cgaattcataaagacaaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccacc |
4637168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 4783355 - 4783617
Alignment:
| Q |
13 |
aagaatattgcattcaaatcaacccaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaa |
112 |
Q |
| |
|
||||||||| ||| |||||||| ||||| |||||||||||||||||||||||||| ||| || | ||| |||| | |||| |||||| |||||||| |
|
|
| T |
4783355 |
aagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcc---caacaacacaaaccaattgattcctagttatgctttcattaa |
4783451 |
T |
|
| Q |
113 |
tggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggactac |
212 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||| | | ||| | | || | || || |||||||||||||| || |
|
|
| T |
4783452 |
cggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgaccaagattatcttatcaatttacctggttttgacaacacggattat |
4783551 |
T |
|
| Q |
213 |
caagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttcca |
278 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||| || ||| ||| |||||||||| |
|
|
| T |
4783552 |
caagttcttaactacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttcca |
4783617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 4815784 - 4816046
Alignment:
| Q |
13 |
aagaatattgcattcaaatcaacccaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaa |
112 |
Q |
| |
|
||||||||| ||| |||||||| ||||| |||||||||||||||||||||||||| ||| || | ||| |||| | |||| |||||| |||||||| |
|
|
| T |
4815784 |
aagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcc---caacaacacaaaccaattgagtcctagttatgctttcattaa |
4815880 |
T |
|
| Q |
113 |
tggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggactac |
212 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||| | | ||| | | || | || || | |||||||||||| ||| |
|
|
| T |
4815881 |
cggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgaccaagattatcgtatcaagttacctggttctgacaacacggaatac |
4815980 |
T |
|
| Q |
213 |
caagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttcca |
278 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||| || ||| ||| |||||||||| |
|
|
| T |
4815981 |
caagttcttaacaacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttcca |
4816046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 4654071 - 4653883
Alignment:
| Q |
13 |
aagaatattgcattcaaatcaacccaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaa |
112 |
Q |
| |
|
||||||||||||| ||| || | || ||| ||||||||||||||||||||||||| ||| || | ||| || ||||||||||||||||| |||||||| |
|
|
| T |
4654071 |
aagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcc---caacaacacaaaccattcaaatccttattatgctttcattaa |
4653975 |
T |
|
| Q |
113 |
tggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaaca |
204 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||| |||||||||||| |||||| ||| | || ||||||||||||| ||||||| |
|
|
| T |
4653974 |
tggaattgaagttgtgtctatgccttcttttctctattactcaaacctcaatgccccaaattatgacttcaaatcacttgactcagacaaca |
4653883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 4845532 - 4845792
Alignment:
| Q |
13 |
aagaatattgcattcaaatcaacccaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaa |
112 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||||||||||||||||| ||||| || || ||||| ||| ||||||| |||||| ||| |||| |
|
|
| T |
4845532 |
aagaatattgcattcagatcaaaccaaatgggaagctaaacataactttctttccg---aacaacataaacgaattgaatcctttttatgctttcgttaa |
4845628 |
T |
|
| Q |
113 |
tggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggactac |
212 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| ||||||||||||| ||||| ||| |||||||| |||| | ||| ||||||||||| || ||| |
|
|
| T |
4845629 |
cggaatcgaagttgtgtcgatgccttcttttctctattacacaaacccagatgacttaaattattatttcaaattaattggctttgacaacagagaatac |
4845728 |
T |
|
| Q |
213 |
caagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttc |
276 |
Q |
| |
|
|| ||| ||| || ||||| || |||| |||||||||||||||||| ||||||| |||||||| |
|
|
| T |
4845729 |
gaaattcgtaatgataaagctttggagatggtttatagagtcaatgttggtgaaaatcaagttc |
4845792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 286
Target Start/End: Complemental strand, 4667406 - 4667246
Alignment:
| Q |
126 |
gtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggactaccaagttcttaacg |
225 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| ||||||||| ||| |||||| || |||||||||||||| || || ||||| ||| |||| |
|
|
| T |
4667406 |
gtgtctatgccgtcttttctctattacacaaacctcagtgacccaaattatcatttgacattacttgactttgacagcaatgaataccatattcctaaca |
4667307 |
T |
|
| Q |
226 |
acaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccaccgggtga |
286 |
Q |
| |
|
||||||| | ||||||||||||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
4667306 |
acaaagctatggagacggtttatagagtcagcgttggtgaaagtcaagttccacctggtga |
4667246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 4644200 - 4644130
Alignment:
| Q |
98 |
ttatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacc |
168 |
Q |
| |
|
|||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
4644200 |
ttatgctttcattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgacc |
4644130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 4631505 - 4631451
Alignment:
| Q |
13 |
aagaatattgcattcaaatcaacccaaatgagaagctaaacataactttcattcc |
67 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4631505 |
aagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc |
4631451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 4644270 - 4644216
Alignment:
| Q |
13 |
aagaatattgcattcaaatcaacccaaatgagaagctaaacataactttcattcc |
67 |
Q |
| |
|
|||| |||||||| ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
4644270 |
aagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattcc |
4644216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 4644088 - 4644018
Alignment:
| Q |
210 |
taccaagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccacc |
280 |
Q |
| |
|
|||||| ||||||| |||||||| || |||| ||||||||||||||| || ||| || |||||||||||| |
|
|
| T |
4644088 |
taccaaattcttaatgacaaagctttggagatggtttatagagtcaacgttggtcgaattcaagttccacc |
4644018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 18925344 - 18925525
Alignment:
| Q |
98 |
ttatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgacttt |
197 |
Q |
| |
|
|||||| ||||| || ||||| || ||||||| |||||||||||||| ||||||||||||||||||||| |||| || |||| || | ||||| | || |
|
|
| T |
18925344 |
ttatgctttcatcaacggaattgagatcgtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcatttaaagttacttggcctt |
18925443 |
T |
|
| Q |
198 |
gacaacacggactaccaagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccac |
279 |
Q |
| |
|
|| |||| | | ||| || | | ||||||| ||||||||||||||||||||||| || ||||| | ||||||||||| |
|
|
| T |
18925444 |
gaaaacatgaaatacaaaatcagcagtgacaaagtgttagagacggtttatagagtcagcgttggtgataatcaagttccac |
18925525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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