View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20557_high_12 (Length: 280)
Name: NF20557_high_12
Description: NF20557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20557_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 10367106 - 10367395
Alignment:
| Q |
1 |
cctattgattgtgttaccaaaacctaaaacccaaaacccacatcacaaca------------------taagcagcaaaaaactccgttgactgtcacaa |
82 |
Q |
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| T |
10367106 |
cctattgactgtgttaccaaaacctaaaacccaaaacccacatcacaacataagcagcaaaaaaaacataagcagcaaaaaactccgttgactgtcacaa |
10367205 |
T |
|
| Q |
83 |
aaccaaggttgttccaatggcaaccttcgactccttcagagacatgtacgacattgcactcaaacctcgtctcctcaacactctcatcagagacaatctc |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10367206 |
aaccaaggttgttccaatggcaaccttcgactccttcagagacatgtacgacattgcactcaaacctcgtctcctcaacactctcatcagagacaatctc |
10367305 |
T |
|
| Q |
183 |
cctacagtggaccaccccttttccaacccttcccaactctccaacgttgtctctttgatcaaaacacactctctcttatctgatgatgtc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
10367306 |
cctacagtggaccaccccttttccaacccttcccaactctccaacgttgtctctttgatcaaaacacactctctcttatccgaggatgtc |
10367395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 94 - 262
Target Start/End: Complemental strand, 34364706 - 34364538
Alignment:
| Q |
94 |
ttccaatggcaaccttcgactccttcagagacatgtacgacattgcactcaaacctcgtctcctcaacactctcatcagagacaatctccctacagtgga |
193 |
Q |
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||||||||||| |||| || ||||| ||||||||||||| ||||||| ||||| || | ||||||||| |||||||||| | ||||||| | ||| |
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| T |
34364706 |
ttccaatggcagcctttgagcacttcaaagacatgtacgacgttgcactgaaaccacgcttgctcaacactatcatcagagaacacctccctagcgcgga |
34364607 |
T |
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| Q |
194 |
ccaccccttttccaacccttcccaactctccaacgttgtctctttgatcaaaacacactctctcttatc |
262 |
Q |
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| T |
34364606 |
tcatcccttttccaacccttctgaactctccaaagttgtctctttgatcaaaacacactctcttttatc |
34364538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 34364823 - 34364777
Alignment:
| Q |
18 |
caaaacctaaaacccaaaacccacatcacaacataagcagcaaaaaact |
66 |
Q |
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||||||||||||||||||||||||| || |||||||||||| |||||| |
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| T |
34364823 |
caaaacctaaaacccaaaacccaca--acgacataagcagcacaaaact |
34364777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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