View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20557_high_18 (Length: 250)
Name: NF20557_high_18
Description: NF20557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20557_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 62 - 242
Target Start/End: Original strand, 36356805 - 36356985
Alignment:
| Q |
62 |
ggcttctggacaagtcgtcaatttggataagtctaaggcatcatttagtcgaaatgtgcgtgaagaggaaaaggaaatgatttgtaacaagatgaatgta |
161 |
Q |
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| T |
36356805 |
ggcttctggacaagtcgtcaatttggataagtctgaggcatcatttagtcgaaatgtgcgtgaagaggaaaaagaaatgatttgtaacaagatgaatgta |
36356904 |
T |
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| Q |
162 |
aagactgtgatgtcccatactaaatacctaggccttcatgtggtgtttggtagatccaagaaggaaattttctcctttgtt |
242 |
Q |
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| T |
36356905 |
aagactgtgatgtcccatactaaatacctaggccttcatgtggtgtttggtagatccaagaaggaaattttctcctttgtt |
36356985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 36356087 - 36356148
Alignment:
| Q |
1 |
cagttctaaattatgctttggaggttctaaataacggtagaagcccggaagatacgaataag |
62 |
Q |
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| T |
36356087 |
cagttctgaattatgctttagagattctaaataacggtagaagcccagaagatatgaataag |
36356148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 62 - 242
Target Start/End: Complemental strand, 35650929 - 35650749
Alignment:
| Q |
62 |
ggcttctggacaagtcgtcaatttggataagtctaaggcatcatttagtcgaaatgtgcgtgaagaggaaaaggaaatgatttgtaacaagatgaatgta |
161 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |
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| T |
35650929 |
ggcttctggacaagtcgtcaatttggataagtttgaggcatcatttagtcgaaatgtgcgtgaagaggaaaaagaaatgatctgtaacaagatgaaagta |
35650830 |
T |
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| Q |
162 |
aagactgtgatgtcccatactaaatacctaggccttcatgtggtgtttggtagatccaagaaggaaattttctcctttgtt |
242 |
Q |
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| T |
35650829 |
aagactgtgatgtcccatactaaatacctaggtcttccagtggtgtttggtagattcaagaaggaaattttctcctttgtt |
35650749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 62 - 242
Target Start/End: Original strand, 40049070 - 40049250
Alignment:
| Q |
62 |
ggcttctggacaagtcgtcaatttggataagtctaaggcatcatttagtcgaaatgtgcgtgaagaggaaaaggaaatgatttgtaacaagatgaatgta |
161 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
40049070 |
ggcttctggacaagtcgtcaatttggataagtctgaggcatcatttagtcgaaatgtgcgtgaagaggaaaaagaaatgatctgtaacaagatgaatgta |
40049169 |
T |
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| Q |
162 |
aagactgtgatgtcccatactaaatacctaggccttcatgtggtgtttggtagatccaagaaggaaattttctcctttgtt |
242 |
Q |
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| T |
40049170 |
aagactgtgatgtctcatactaaatacctgggtcttccagtggtgtttggtagatccaagaagcaaattttctcctttgtt |
40049250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 40048345 - 40048396
Alignment:
| Q |
3 |
gttctaaattatgctttggaggttctaaataacggtagaagcccggaagata |
54 |
Q |
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| T |
40048345 |
gttctcaattatgctctggatgttctaaataacggtagaagcccggaggata |
40048396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 62 - 242
Target Start/End: Complemental strand, 8710411 - 8710231
Alignment:
| Q |
62 |
ggcttctggacaagtcgtcaatttggataagtctaaggcatcatttagtcgaaatgtgcgtgaagaggaaaaggaaatgatttgtaacaagatgaatgta |
161 |
Q |
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||||||||| ||||| || |||||||| || || ||||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||||||||| |
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| T |
8710411 |
ggcttctggtcaagttgtaaatttggacaaatcagaggcatcatttagtcgaaatgtgtgtgaagaggaaaaagaaatgatatgtaatcagatgaatgta |
8710312 |
T |
|
| Q |
162 |
aagactgtgatgtcccatactaaatacctaggccttcatgtggtgtttggtagatccaagaaggaaattttctcctttgtt |
242 |
Q |
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|||||||||||||| ||||||| |||||| ||||| | || ||||||||||||||||||||||| |||||||| |||||| |
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| T |
8710311 |
aagactgtgatgtctcatactagatacctgggcctcccagttgtgtttggtagatccaagaaggagattttctcttttgtt |
8710231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 62 - 235
Target Start/End: Complemental strand, 20925369 - 20925196
Alignment:
| Q |
62 |
ggcttctggacaagtcgtcaatttggataagtctaaggcatcatttagtcgaaatgtgcgtgaagaggaaaaggaaatgatttgtaacaagatgaatgta |
161 |
Q |
| |
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||||| ||| ||||| ||||||||||| || | || ||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| |
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| T |
20925369 |
ggcttttggtcaagttgtcaatttggacaaattagagacatcatttagtcgaaatgttcgtgaagaggaaaaagaaatgatctgtaatcagatgaatgta |
20925270 |
T |
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| Q |
162 |
aagactgtgatgtcccatactaaatacctaggccttcatgtggtgtttggtagatccaagaaggaaattttctc |
235 |
Q |
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|||||||||||||| ||||||| |||||| ||||| | || ||||||||||||||||||||||| |||||||| |
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| T |
20925269 |
aagactgtgatgtctcatactagatacctgggcctcccagttgtgtttggtagatccaagaaggagattttctc |
20925196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 15707128 - 15707217
Alignment:
| Q |
81 |
aatttggataagtctaaggcatcatttagtcgaaatgtgcgtgaagaggaaaaggaaatgatttgtaacaagatgaatgtaaagactgtg |
170 |
Q |
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| T |
15707128 |
aatttggagaagtctgaggcatcgttcagtcgaaatgtgcttgatgaggtaaaagatatgacccgtaacaggatgaatgtaaagactgtg |
15707217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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