View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20557_high_2 (Length: 518)
Name: NF20557_high_2
Description: NF20557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20557_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 44114239 - 44114395
Alignment:
| Q |
1 |
aataattgaggcatatcagccaaaaaatagtttttgataagcagcatatcagccaatatgtactt-aattgttggctaggtcacaacagggtaaagtggg |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
44114239 |
aataattgaggcatatcagccaaaaaataatttttgataagcagcatatcagccaatatgtacttgaattgttggctaggtcccaacagggtaaagtggg |
44114338 |
T |
|
| Q |
100 |
atttggataggattgttgtcaccacaattccatatgcattcattaacgatatatatg |
156 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44114339 |
atttgaataggattgttgtcgccacaattccatatgcattcattaacgatatatatg |
44114395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 9623729 - 9623670
Alignment:
| Q |
203 |
taatccgaagttcaaccgaaaaataagtaaaatttgattaagaatcgttccacctaagaat |
263 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| |||| |||||| ||||||||||||||| |
|
|
| T |
9623729 |
taatccgaagttcaaccgaaaggtaattaaaa-ctgatcaagaattgttccacctaagaat |
9623670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University