View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20557_high_20 (Length: 242)
Name: NF20557_high_20
Description: NF20557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20557_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 172
Target Start/End: Complemental strand, 36356056 - 36355890
Alignment:
| Q |
7 |
atgatcatttaaaataagtgtatgtttggtatcacagtaagtatgtgtgcgctttatcatttcatnnnnnnnnncttatgtttacacattttccaattac |
106 |
Q |
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| T |
36356056 |
atgatcatttaaaataagtgtatgtttggtatcacagtgagtatgtgtgcggtttatcatttcataaacaaaaacttatgtttacacatttttcaattac |
36355957 |
T |
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| Q |
107 |
ttttttcaacgtaaaagtcaaactctccaaatttgggc-ttcatgttttcacatgtttgaggcattt |
172 |
Q |
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| T |
36355956 |
ttttttcaacgtaaaagtcaaactcttcaaatttgggctttcatgttttcacatgtttgaggcattt |
36355890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 36355910 - 36355853
Alignment:
| Q |
170 |
tttcacatgtttgaggcatttggccgcatatccaaacagtcactgagtttgttaaaat |
227 |
Q |
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| T |
36355910 |
tttcacatgtttgaggcatttggccgcatatccaaacagtcactgagtttgttaaaat |
36355853 |
T |
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