View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20557_high_22 (Length: 214)

Name: NF20557_high_22
Description: NF20557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20557_high_22
NF20557_high_22
[»] chr7 (2 HSPs)
chr7 (1-104)||(3808689-3808790)
chr7 (127-214)||(3808529-3808616)
[»] chr2 (3 HSPs)
chr2 (124-199)||(43783583-43783658)
chr2 (125-199)||(9793306-9793380)
chr2 (29-99)||(43783675-43783745)
[»] chr1 (1 HSPs)
chr1 (124-199)||(23759857-23759932)
[»] chr3 (4 HSPs)
chr3 (125-198)||(21918125-21918198)
chr3 (124-199)||(48608339-48608414)
chr3 (124-197)||(48920525-48920598)
chr3 (29-99)||(48608248-48608318)
[»] chr4 (1 HSPs)
chr4 (124-199)||(22733309-22733382)
[»] chr8 (2 HSPs)
chr8 (124-199)||(39478254-39478329)
chr8 (124-199)||(26664663-26664738)
[»] chr6 (1 HSPs)
chr6 (124-199)||(30340030-30340105)


Alignment Details
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3808790 - 3808689
Alignment:
Q  1 atatatagaaacttgcctaagttaagccccattggaggttcaatgatgcattgagagaattctttatagctgaatgtaaaccggaaacaaaggagggtgc 100  Q
    ||||||||||||||||||||||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3808790 atatatagaaacttgcctaagttaagcc--attagaggttcaatgatgcatcgagagaattctttatagctgaatctaaaccggaaacaaaggagggtgc 3808693  T
Q  101 catt 104  Q
    ||||    
T  3808692 catt 3808689  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 3808616 - 3808529
Alignment:
Q  127 tggaattgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatattaattcattgcagaaa 214  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3808616 tggaatggagagtttgaatcataattatgtgtgtacataaaagatgctgattgagtagtttgaatctcatattaattcattgcagaaa 3808529  T

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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 43783658 - 43783583
Alignment:
Q  124 gagtggaattgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatatt 199  Q
    ||||||||| |||||||||||||||| |||| |||||||||| | |||| ||||||||||||||||||||||||||    
T  43783658 gagtggaatggagagtttgaatcatagttatatatgtacatagaggatgatgattgggtagtttgaatctcatatt 43783583  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 199
Target Start/End: Complemental strand, 9793380 - 9793306
Alignment:
Q  125 agtggaattgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatatt 199  Q
    |||||||| |||||||||||||||| |||| | |||| ||| | |||| ||||||||||||||||||||||||||    
T  9793380 agtggaatggagagtttgaatcatagttatatgtgtagatagaggatgatgattgggtagtttgaatctcatatt 9793306  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 43783745 - 43783675
Alignment:
Q  29 ccattggaggttcaatgatgcattgagagaattctttatagctgaatgtaaaccggaaacaaaggagggtg 99  Q
    ||||| ||||||  ||||| | |||| ||||||| ||||||||| |||||||| | |||||||||||||||    
T  43783745 ccattagaggtttgatgatacgttgatagaattcgttatagctgtatgtaaactgcaaacaaaggagggtg 43783675  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 23759932 - 23759857
Alignment:
Q  124 gagtggaattgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatatt 199  Q
    ||||||||| |||||||||||||||| |||| | |||||||| | |||| ||||||||||||||||||||||||||    
T  23759932 gagtggaatggagagtttgaatcatagttatatgtgtacatagaggatggtgattgggtagtttgaatctcatatt 23759857  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 21918198 - 21918125
Alignment:
Q  125 agtggaattgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatat 198  Q
    ||||||||  ||||||||||||||| |||||| |||||||| | |||| |||||||||||||||||||||||||    
T  21918198 agtggaatgaagagtttgaatcatagttatgtgtgtacatagaggatgatgattgggtagtttgaatctcatat 21918125  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 48608339 - 48608414
Alignment:
Q  124 gagtggaattgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatatt 199  Q
    |||||||||  ||||||||||||||| |||| | |||||||| | |||| ||||||||||||||||||||||||||    
T  48608339 gagtggaatgaagagtttgaatcatagttatatgtgtacatagaggatgatgattgggtagtttgaatctcatatt 48608414  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 48920598 - 48920525
Alignment:
Q  124 gagtggaattgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcata 197  Q
    ||||||||| |||||||||||||||| |||| | |||||||| | ||||  |||||||||||| ||||||||||    
T  48920598 gagtggaatggagagtttgaatcatagttatatgtgtacatagaggatgacgattgggtagttagaatctcata 48920525  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 48608248 - 48608318
Alignment:
Q  29 ccattggaggttcaatgatgcattgagagaattctttatagctgaatgtaaaccggaaacaaaggagggtg 99  Q
    ||||| ||||||  ||||| | |||| ||||||| ||||||||| |||||||| | |||||||||||||||    
T  48608248 ccattagaggtttgatgatacgttgatagaattcgttatagctgtatgtaaactgcaaacaaaggagggtg 48608318  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 22733382 - 22733309
Alignment:
Q  124 gagtggaattgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatatt 199  Q
    ||||||||| |||||||||||||||| ||||  ||||||||| | |||| ||||||||||||||||||||||||||    
T  22733382 gagtggaatggagagtttgaatcatagttat--atgtacatagaggatgatgattgggtagtttgaatctcatatt 22733309  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 39478329 - 39478254
Alignment:
Q  124 gagtggaattgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatatt 199  Q
    |||| |||| |||||||||||||||| |||| | |||||||| | |||| ||||||||||||| ||||||||||||    
T  39478329 gagttgaatggagagtttgaatcatagttatatgtgtacatagaggatgatgattgggtagttcgaatctcatatt 39478254  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 26664738 - 26664663
Alignment:
Q  124 gagtggaattgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatatt 199  Q
    ||||||||| || ||||||||||||| |||| | |||||||| | || | |||||| |||||||||||||||||||    
T  26664738 gagtggaatggaaagtttgaatcatagttatatgtgtacatagaggacgatgattgagtagtttgaatctcatatt 26664663  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 30340030 - 30340105
Alignment:
Q  124 gagtggaattgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatatt 199  Q
    ||||||||| |||||||||||||||| |||| | |||| ||  | |||| ||||||||||||||||||||||||||    
T  30340030 gagtggaatggagagtttgaatcatagttatatgtgtatatggaggatgatgattgggtagtttgaatctcatatt 30340105  T

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