View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20557_high_5 (Length: 389)
Name: NF20557_high_5
Description: NF20557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20557_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 37976259 - 37975899
Alignment:
| Q |
13 |
aaaattcacttgtctgccaacaaaacttatatcaaagtttggataattatttttgtttgaaatgattaaagtttggatagtagctagccaaattcgattt |
112 |
Q |
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| T |
37976259 |
aaaattcacttgtctgccagcaaaacttatatcaaagtttggataattatttttgtttgaaatgattaaagtttggatagtagctagccaaattcgattt |
37976160 |
T |
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| Q |
113 |
agatatgagagctattaactatgctatcaaccactagctttcgatctagtttaattgacacacatcgcttccatatatgtagttaatacgttgtgccatg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||| |
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| T |
37976159 |
agatatgagagctattaactatgctatcaaccactagctttcgatctagtttaattgacacacatcacttccatagatgtagttaatccgctgtgccatg |
37976060 |
T |
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| Q |
213 |
tcgccttcgcttggataaaatatcatattctatctcggatacacatacctattccaaaagaatgttgttcttgaaacaacgttgtatccacattgcattc |
312 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37976059 |
tcgccttcgcttggataaaatatcctattctatctcggatacacatacctattccaaaagaatgttgttcttgaaacaacgttgtatccacattgcattc |
37975960 |
T |
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| Q |
313 |
taattctcctcattgactgtggtagccatcatgccagatgaactgatacgctgcatggttt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37975959 |
taattctcctcattgactgtggtagccatcatgccagatgaactgatacgctgcatggttt |
37975899 |
T |
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