View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20557_high_7 (Length: 344)
Name: NF20557_high_7
Description: NF20557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20557_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 15758317 - 15758159
Alignment:
| Q |
18 |
ctaaattaaaatgcaataaaggaaaatagcaaaaccaaataaaccataggctaggaataatatatgattacagtacgtacgtagtatgtaaatactgaaa |
117 |
Q |
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| T |
15758317 |
ctaaattaaaatgcaataaaggaaaatagcaaaaccaaataaaccataggctaggaataatatatgattacagta----cgtagtatgtaaatactgaaa |
15758222 |
T |
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| Q |
118 |
cagaacgtatcagcaagaaatggcgagaaacgagaacagatggaaggaaacatgaatttgttg |
180 |
Q |
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| T |
15758221 |
cagaacgtatcaacaggaaatggcgagaaacgaaaacatatcggaggaaacatgaatttgttg |
15758159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 331
Target Start/End: Complemental strand, 15756953 - 15756862
Alignment:
| Q |
242 |
agacgaattaatgaaaatatgagtttgatgaattttt--gagtgataaattgttggcaaattaggaatttggtgtcgaagacgaagattaaa |
331 |
Q |
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| T |
15756953 |
agacaaattaatgtaaatatgagtttgattaatttttatgagtgatgaattgttggcaaattagaaatttggtgttgaagatgaagattaaa |
15756862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 4257903 - 4257946
Alignment:
| Q |
23 |
ttaaaatgcaataaaggaaaatagcaaaaccaaataaaccatag |
66 |
Q |
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| T |
4257903 |
ttaaaatgcaataaaggaaaatagcaaagcaaaataaaccatag |
4257946 |
T |
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