View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20557_high_8 (Length: 340)
Name: NF20557_high_8
Description: NF20557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20557_high_8 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 23215734 - 23216055
Alignment:
| Q |
1 |
agatacatgaaatttttaaaattcacgatatgatggagcttggatacgttaacgaaataagatagcaaaacttgtatagatatgtaatacttataaagaa |
100 |
Q |
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| T |
23215734 |
agatacataaaatttttaaaattcacgatatgatggagcttggatacgttaacgaaataagatagcaaaacttgtatagatatgtaatacttataaagaa |
23215833 |
T |
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| Q |
101 |
agagacatttgatcatttctcattattatgtttacgatgatcattattaacagaaaaatgtctgcgatcatataagaaataataaagttgccgcttataa |
200 |
Q |
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| T |
23215834 |
agagacatt-gatcatttctcattattatgtttacgatgatcattattaacagaaaaatgtctgcgatcatataagaaataataaagttgccgcttataa |
23215932 |
T |
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| Q |
201 |
caatatatattatagatatcaacaaaaacatctttagtagaactcaaaacattcatactataacatcataaaagagaattaatgatgataagatcgtttc |
300 |
Q |
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| T |
23215933 |
caatatatattatagatatcaacaaaaacatctttagtagaactcaaaacattcatactataacatcataaaagagaattaatgatgataagatcgtttc |
23216032 |
T |
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| Q |
301 |
aatttcttcgccttcaaatttgt |
323 |
Q |
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| T |
23216033 |
aatttcttcgccttcaaatttgt |
23216055 |
T |
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Back To:
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Target: scaffold0147 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 29706 - 29670
Alignment:
| Q |
215 |
gatatcaacaaaaacatctttagtagaactcaaaaca |
251 |
Q |
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| T |
29706 |
gatattaacaaaaacatctttagaagaactcaaaaca |
29670 |
T |
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