View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20557_low_17 (Length: 267)
Name: NF20557_low_17
Description: NF20557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20557_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 22123762 - 22123512
Alignment:
| Q |
1 |
gatcttcattcaaatgggagaatgccaacttcaactgaacaatattttgaagattgggaatccactctggcaacttctctaacctcgcatgtagtctaag |
100 |
Q |
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| T |
22123762 |
gatcttcattcaaatgggagaatgccaacttcaactgaacaatattttgaagcttgggaatccactctggcaacttctctaacctcgcatgtagtctaag |
22123663 |
T |
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| Q |
101 |
attttgaaccattggtgcgggtgaaatcaaattcagaccaatgacttcgtcattacttgtcaattttgattcaatatttagcttctccaatggttgcaac |
200 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22123662 |
attttgaaccattggtgtgggtgaaatcaaattcaaaccaatgacttcgtcattacttgtcaattttgattcaatatttagcttctccaattgttgcaac |
22123563 |
T |
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| Q |
201 |
tcattcaacgaggaaaataaagccatcccagtttctctcccaacttgaacc |
251 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22123562 |
tcattcaacgaggaaaataaagtcatcccagtttctctcccaacttgaacc |
22123512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 22613914 - 22614016
Alignment:
| Q |
15 |
tgggagaatgccaacttcaactgaacaatattttgaagattgggaatccactctggcaacttctctaacctcgcatgtagtctaagattttgaaccattg |
114 |
Q |
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|||||| || ||||||| |||| ||||| |||||| || || ||||||||||||||||||||||||||| || ||| ||||||| || | ||| ||||| |
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| T |
22613914 |
tgggagcattccaactttaactcaacaagattttgtagctttggaatccactctggcaacttctctaacttcccatacagtctaatatctcgaagcattg |
22614013 |
T |
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| Q |
115 |
gtg |
117 |
Q |
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||| |
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| T |
22614014 |
gtg |
22614016 |
T |
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