View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20557_low_20 (Length: 250)
Name: NF20557_low_20
Description: NF20557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20557_low_20 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 31321613 - 31321858
Alignment:
| Q |
1 |
taggaacacacagaagtggtggtcagagaattaagtgtaatgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaagg |
100 |
Q |
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| T |
31321613 |
taggaacacacagaagtgatggtcagagaattaagtgtaatgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaagg |
31321712 |
T |
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| Q |
101 |
agcattgtcgccaggtgagaattggaatttgtatacttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaa |
200 |
Q |
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| T |
31321713 |
agcattgtggccaggtgagaattggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaa |
31321812 |
T |
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| Q |
201 |
aatggtgagagttgggaagctgaagggttgtttgtctgtgttgcta |
246 |
Q |
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| T |
31321813 |
aatggtgagagttgggaagctgaagggttgtttgtttgtgatgcta |
31321858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 31333866 - 31334111
Alignment:
| Q |
1 |
taggaacacacagaagtggtggtcagagaattaagtgtaatgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31333866 |
taggaacacacagaagtggtggtcagagaattaagtgtaatgagaacaccagtgagaaggaaattgaagagtttatagatagtgtttatccaatggaagg |
31333965 |
T |
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| Q |
101 |
agcattgtcgccaggtgagaattggaatttgtatacttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaa |
200 |
Q |
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| T |
31333966 |
agcattgtggccaggtgagaattggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaa |
31334065 |
T |
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| Q |
201 |
aatggtgagagttgggaagctgaagggttgtttgtctgtgttgcta |
246 |
Q |
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| T |
31334066 |
aatggtgagagttgggaagctgaagggttgtttgtttgtgatgcta |
31334111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2058 - 2010
Alignment:
| Q |
1 |
taggaacacacagaagtggtggtcagagaattaagtgtaatgagaacac |
49 |
Q |
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| T |
2058 |
taggaacacacagaagtggtggtcagagaattaagtgtaatgagaacac |
2010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 39110404 - 39110507
Alignment:
| Q |
137 |
ttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtc |
236 |
Q |
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|||||| ||||||||||||||||| | |||||| ||||||| | || ||||| |||||||| ||||| || ||||||||||| ||||||||| ||| |
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| T |
39110404 |
ttctgcacatcaaatgggaagttgtagaatgggtaagaatgaagaagagggtgcagttgatgagaatggagaaagttgggaagcaaaagggttgtatgtg |
39110503 |
T |
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| Q |
237 |
tgtg |
240 |
Q |
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|||| |
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| T |
39110504 |
tgtg |
39110507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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