View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20557_low_4 (Length: 409)
Name: NF20557_low_4
Description: NF20557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20557_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 3 - 375
Target Start/End: Original strand, 23215345 - 23215716
Alignment:
| Q |
3 |
tatcatgcaagattcaataacatcattcagtgtccaaaatttgttgttattgaatactgcaaagtcaaatattaaagnnnnnnnnttgttacattcttta |
102 |
Q |
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| T |
23215345 |
tatcatgcaagattcaataacatcattcagtgtccaaaatttgttgttattgaatactgcaaagtcaaatattaaagaaaaaaaattgttacattcttta |
23215444 |
T |
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| Q |
103 |
aacatgtaaaaagtagaaaccgatgaatattagtacattatatcacaaaacaaaatttgtttgttactttttaactgataaataacacaattgtacagtg |
202 |
Q |
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| T |
23215445 |
aacatgtaaaaagtagaaaccgatgaatattagtacattatatcacaaaacaaaatttgtttgttactttttaactgataaataacacaattgtacagtg |
23215544 |
T |
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| Q |
203 |
gttttaacctcagttctcttcaaaatctgaccaatgggttcatccatttctgccagcttgcgaacagactttacaagactagcaatctgaaaacacacaa |
302 |
Q |
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| T |
23215545 |
gttttaacctcagttctcttcaaaatctgaccaatgggttcatccatttctgccagcttgcgaacagactttacaagactagcaatctgaaaa-acacaa |
23215643 |
T |
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| Q |
303 |
attaaggttaggtaaaaacattcttgttgaaagagaaaacatcatacaacttaagattagcttcaagctatga |
375 |
Q |
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|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23215644 |
atcaaggttaggtaaaaactttcttgttgaaagagaaaacatcatacaacttaagattagcttcaagctatga |
23215716 |
T |
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Back To:
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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 6469852 - 6469777
Alignment:
| Q |
209 |
acctcagttctcttcaaaatctgaccaatgggttcatccatttctgccagcttgcgaacagactttacaagactag |
284 |
Q |
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|||||||||||||||||||| |||||||| ||||| ||||| ||||||||| ||| ||||||||| ||||||||| |
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| T |
6469852 |
acctcagttctcttcaaaatttgaccaattggttcttccatatctgccagcacgcgcacagactttgcaagactag |
6469777 |
T |
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