View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20557_low_6 (Length: 375)
Name: NF20557_low_6
Description: NF20557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20557_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 58 - 320
Target Start/End: Complemental strand, 22777268 - 22777006
Alignment:
| Q |
58 |
aaaccaaatgtactcattcaggcaacgtatcatcacttggttgatcctaatcatgataatattatacatcctttactcttccaatcttcttttattaacc |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22777268 |
aaaccaaatgtactcattcaggcaacgtatcatcacttggctgatcctaatcatgataatattatacatcctttactcttccaatcttcttttattaacc |
22777169 |
T |
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| Q |
158 |
actgaaaagcaaggctgttccacgaacgttcgtttagatgcagccgcagatgaaaagcttgagatgattagtactggaaatatatccaaaactacatcat |
257 |
Q |
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|||||||| | || |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22777168 |
actgaaaaacgagattgttccaccaacgttcgtttagatgcagccgcagatgaaaaacttgagatgattagtactggaaatatatccaaaactacatcat |
22777069 |
T |
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| Q |
258 |
ctataattgaaaaagaagtttcaaacgagnnnnnnntgaaacaggacaaaacaacaaaggata |
320 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22777068 |
ctataattgaaaaagaagtttcaaacgagaaaaaaatgaaacaggacaaaacaacaaaggata |
22777006 |
T |
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