View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20557_low_9 (Length: 327)
Name: NF20557_low_9
Description: NF20557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20557_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 7 - 320
Target Start/End: Original strand, 48157860 - 48158173
Alignment:
| Q |
7 |
tcaaatacgtccccacatttaatctataaaattacgattnnnnnnngaagatttcatgagcaaagagttcaggttcttttggtaattggtgtacaatgaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48157860 |
tcaaatacgtccccacatttaatctataaaattacgattaaaaaaagaagatttcatgagcaaagagttcaggttcttttggtaattggtgtacaatgaa |
48157959 |
T |
|
| Q |
107 |
tggtaaaggcatgaagttgatgtaaagtagaggactaacttggcattcagtctcatccggtctattgttgcaagtttggagacaagcaatgttggcagca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48157960 |
tggtaaaggcatgaagttgatgtaaagtagaggactaacttggcattcagtctcatccggtctattgttgcaagtttggagacaagcaatgttggcagca |
48158059 |
T |
|
| Q |
207 |
catgatgggtttgcaagacacttagccaattctaccctgcgtacgtaaaagtggaaggcctgttatattactttctgttattatggttttgaggtaatgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48158060 |
catgatgggtttgcaagacacttagccaattctaccctgcgtacgtaaaagtggaaggcctgttatattactttctgttattatggttttgaggtaatgt |
48158159 |
T |
|
| Q |
307 |
attagtatgtgtat |
320 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
48158160 |
attagtatgtgtat |
48158173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 18718653 - 18718570
Alignment:
| Q |
155 |
agtctcatccggtctattgttgcaagtttggagacaagcaatgttggcagcacatgatgggtttgcaagacacttagccaattc |
238 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||||||||||||||| || ||||||||| |||||| |||||| |||||||||| |
|
|
| T |
18718653 |
agtctcatccggcctattgctgcaattttggagacaagcaatgttgacaacacatgatgagtttgccagacacctagccaattc |
18718570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University