View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20558_low_1 (Length: 579)
Name: NF20558_low_1
Description: NF20558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20558_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 27125357 - 27125896
Alignment:
| Q |
1 |
caaaatcagttgaagctttgtgatcctacacagttacaactatggtggtcctacacagtttgaggtttattattctgagagctttattatctatggcggt |
100 |
Q |
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| T |
27125357 |
caaaatcagttgaagctt-gtgatactacacagttacaactatggtggtcctacacagtttgatgtttattattctgaaagctttattatctatggtgat |
27125455 |
T |
|
| Q |
101 |
cctacacagtttgaggaattggtctctgtacttacgcacaaagataaaccggtttaaactataaataaataaatcaatggtaggagtttaattatttgat |
200 |
Q |
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| T |
27125456 |
cctacacagtttgaggaattagtctctgcacttgcgtacaaagattaaccggtttaaacaaaaaata--taaagcaatggtaggaatttaattatttgat |
27125553 |
T |
|
| Q |
201 |
cctaatatcccaaaatgagaaggcttcattcacatttgacagcattcaatttgcataaaagcgtctcatacccaatacattgctcaaactgtattggtag |
300 |
Q |
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| T |
27125554 |
cctaatatcccaaaatgagaagacttcattcacatttgacagcattcaatttgaataaaattaactcataccaaatacattgctcaaactttattgggag |
27125653 |
T |
|
| Q |
301 |
attattttcaaagttttccgaatgaaaaccactatacttaacggaaagcattacaaaccaaaaactgttatgcagatcatagaccatcattttgctatgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27125654 |
attattttcaaagttttccgaatgaaaaccactatacttaacggaaagcattacaaaccaaaaactgttatgcagatcatagaccatcattttgcaatgt |
27125753 |
T |
|
| Q |
401 |
ctatgcttattttaagaggatttagagaaaatgaaccgcgatgatgtacaagatgcattgtagggtatgaaccctttccttttgacgccttagaaatctt |
500 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27125754 |
ctatgcttattttaaggggatttagagaaaatgaaccacgatgatgtacaagatgcattgtagggtatgaaccctttccttttgacgccttagaaatctt |
27125853 |
T |
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| Q |
501 |
aaaaggacactgagggtgaaattttgaagtctatatcccacag |
543 |
Q |
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| T |
27125854 |
aaaaggacactgagggtgaaattttgaagtctatatcccacag |
27125896 |
T |
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