View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20558_low_2 (Length: 353)
Name: NF20558_low_2
Description: NF20558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20558_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 31525121 - 31524805
Alignment:
| Q |
19 |
acaacgccgcattcatcctctgctccgcgtaaagcggccaagcaataataggcacaccgttggttaaactctcaagcacagaaccccacccacagtgtga |
118 |
Q |
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| T |
31525121 |
acaacgccgcattcatcctctgctccgcgtaaagcggccaagcaataataggcacaccgttggttaaactctcaagcactgaaccccacccacagtgtga |
31525022 |
T |
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| Q |
119 |
aacaaaaccaccaatggaaggatgtttcaaaatagtgacttgtggtgcccattcatgaagaaacaaacccacattcttattcttaattctctctacaaac |
218 |
Q |
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| T |
31525021 |
aacaaaaccaccaatggaaggatgtttcaaaatagtgacttgtggtgcccattcatgaagaaacaaacccacattcttattcttaattctctctacaaac |
31524922 |
T |
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| Q |
219 |
ctctcaggtaagtgcttacctatttgatcatcaagttcatcgccaaacccgtcaccactggatccagtggtgaaaaaagctgcgtccacagcttctgttg |
318 |
Q |
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| T |
31524921 |
ccctcaggtaagtgcttacctatttgatcatcaagttcatcgccaaacccgtcaccaccggatccagtggtgaaaaaagctgcgtccacagcttctgttg |
31524822 |
T |
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| Q |
319 |
tggacgcacacgcacgt |
335 |
Q |
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| T |
31524821 |
tggacgcacacgcacgt |
31524805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 38003492 - 38003429
Alignment:
| Q |
76 |
cgttggttaaactctcaagcacagaaccccacccacagtgtgaaacaaaaccaccaatggaagg |
139 |
Q |
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|||| |||| ||||||||||||| ||||||||||||| || ||| |||||||||||| ||||| |
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| T |
38003492 |
cgttcgttatactctcaagcacataaccccacccacattgcgaatgaaaaccaccaatagaagg |
38003429 |
T |
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