View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20559_high_1 (Length: 905)

Name: NF20559_high_1
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20559_high_1
NF20559_high_1
[»] chr6 (12 HSPs)
chr6 (18-747)||(4181109-4181836)
chr6 (18-196)||(4742506-4742684)
chr6 (221-333)||(4742396-4742508)
chr6 (570-746)||(7124374-7124548)
chr6 (203-288)||(21076027-21076112)
chr6 (845-897)||(4180959-4181011)
chr6 (203-288)||(21052805-21052890)
chr6 (286-333)||(21052633-21052680)
chr6 (286-333)||(21075855-21075902)
chr6 (539-746)||(944973-945171)
chr6 (678-746)||(12945526-12945594)
chr6 (332-363)||(4742333-4742364)
[»] chr7 (7 HSPs)
chr7 (537-747)||(47329531-47329741)
chr7 (539-746)||(34095719-34095926)
chr7 (539-746)||(6444030-6444236)
chr7 (646-746)||(29263264-29263364)
chr7 (845-897)||(47329381-47329433)
chr7 (678-746)||(19465314-19465382)
chr7 (678-746)||(29830400-29830468)
[»] chr3 (15 HSPs)
chr3 (537-747)||(5234592-5234802)
chr3 (539-747)||(20107932-20108140)
chr3 (539-746)||(29702398-29702605)
chr3 (570-746)||(55406249-55406424)
chr3 (580-746)||(53284130-53284296)
chr3 (539-746)||(12945349-12945548)
chr3 (569-746)||(33213454-33213622)
chr3 (845-897)||(5234442-5234494)
chr3 (845-897)||(20107775-20107827)
chr3 (539-655)||(29835737-29835853)
chr3 (678-746)||(50359639-50359707)
chr3 (678-746)||(50646785-50646853)
chr3 (690-746)||(31654779-31654835)
chr3 (678-746)||(22426894-22426959)
chr3 (683-741)||(29835661-29835719)
[»] chr2 (9 HSPs)
chr2 (539-747)||(37080592-37080800)
chr2 (570-696)||(7091027-7091153)
chr2 (570-696)||(33751546-33751672)
chr2 (845-897)||(37080442-37080494)
chr2 (678-746)||(14101843-14101911)
chr2 (359-414)||(10018312-10018367)
chr2 (856-897)||(7090851-7090892)
chr2 (661-738)||(30778423-30778500)
chr2 (856-897)||(33751807-33751848)
[»] chr8 (6 HSPs)
chr8 (539-746)||(1786495-1786702)
chr8 (570-696)||(3877609-3877735)
chr8 (578-746)||(30089060-30089219)
chr8 (646-746)||(30936786-30936886)
chr8 (539-746)||(13800649-13800847)
chr8 (856-897)||(3877870-3877911)
[»] chr5 (6 HSPs)
chr5 (539-746)||(39885703-39885910)
chr5 (570-742)||(31480500-31480663)
chr5 (539-746)||(41406001-41406199)
chr5 (539-746)||(40321370-40321568)
chr5 (539-746)||(1835890-1836088)
chr5 (678-746)||(30628558-30628626)
[»] chr4 (11 HSPs)
chr4 (539-746)||(42063012-42063219)
chr4 (539-746)||(47028109-47028316)
chr4 (539-746)||(15530069-15530280)
chr4 (537-746)||(45988123-45988332)
chr4 (539-746)||(24226879-24227077)
chr4 (678-746)||(27296160-27296228)
chr4 (677-746)||(28682941-28683010)
chr4 (678-746)||(4922381-4922449)
chr4 (452-507)||(35364720-35364775)
chr4 (693-746)||(42980111-42980164)
chr4 (570-602)||(28683087-28683119)
[»] scaffold0662 (1 HSPs)
scaffold0662 (539-746)||(6988-7195)
[»] chr1 (8 HSPs)
chr1 (539-746)||(45319616-45319823)
chr1 (539-746)||(47036141-47036339)
chr1 (570-746)||(49410398-49410565)
chr1 (683-746)||(39242498-39242561)
chr1 (678-746)||(27289755-27289823)
chr1 (682-746)||(52382779-52382843)
chr1 (570-605)||(22105432-22105467)
chr1 (683-746)||(22105547-22105610)
[»] scaffold0896 (1 HSPs)
scaffold0896 (570-746)||(1815-1990)
[»] scaffold0685 (1 HSPs)
scaffold0685 (682-746)||(6792-6856)


Alignment Details
Target: chr6 (Bit Score: 653; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 18 - 747
Target Start/End: Complemental strand, 4181836 - 4181109
Alignment:
Q  18 acttggtgtatttcatgttatttatgctcctctctacattaagaagttatttatttctggcctttagtacagattttttgatagggtgaagcaatcatta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4181836 acttggtgtatttcatgttatttatgctcctctctacattaagaagttatttatttctggcctttagtacagattttttgacagggtgaagcaatcatta 4181737  T
Q  118 tgttctatagagttgccctttatgaattctttgatcatggttgttttcatgtgaataaattcttgtatagttggggccaaggttatttatattacagctc 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4181736 tgttctatagagttgtcctttatgaattctttgatcatggttgttttcatgtgaataaattcttgtatagttggggccaaggttatttatattacagctc 4181637  T
Q  218 caaccagattttgctgactgcaaagcgtaggagaattctttggacggctgaaggaaaaactctcaaggtttaaacattgtattgttcctagtttggaaga 317  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4181636 caaccagattttgctgactggaaagcgtaggagaattctttagacggctgaaggaaaaactctcaaggtttaaacattgtattgttcctagtttggaaga 4181537  T
Q  318 tcttgtgttattgctaagaaaaaagtcatatgttatgttccataaatttctttatcaaacatataataaaaaatgatttttaccatgccttttggcattc 417  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4181536 tcttgtgttattgctaagaaaacagtcatatgttatgttccataaatttctttatcaaacatataataaaaaatgatttttaccatgccttttggcattc 4181437  T
Q  418 aacaagtnnnnnnnnntaaggaaattgatagacaaaaagtatcacgaaaatattccgatagtgtaattgtttaacacctttccttaattacattccacta 517  Q
    |||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4181436 aacaagt--aaaaaaataaggaaattgatagacaaaaagtatcacgaaaatattccgatagtgtaattgtttaacacctttccttaattacattccacta 4181339  T
Q  518 gatctctacccgggcaatatttatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4181338 gatctctacccgggcaatatttatggtgaagttattcaattgactttttttatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtt 4181239  T
Q  618 tattgttgcatagtatgtgttgtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtc 717  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4181238 tattgttgcatagtatgtgttgtgcatctgctcaatctattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtc 4181139  T
Q  718 ttattgtgttgcctttcacactatatttaa 747  Q
    ||||||||||||||||||||||||||||||    
T  4181138 ttattgtgttgcctttcacactatatttaa 4181109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 4742684 - 4742506
Alignment:
Q  18 acttggtgtatttcatgttatttatgctcctctctacattaagaagttatttatttctggcctttagtacagattttttgatagggtgaagcaatcatta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4742684 acttggtgtatttcatgttatttatgctcctctctacattaagaagttatttatttctggcctttagtacagattttttgacagggtgaagcaatcatta 4742585  T
Q  118 tgttctatagagttgccctttatgaattctttgatcatggttgttttcatgtgaataaattcttgtatagttggggcca 196  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4742584 tgttctatagagttgtcctttatgaattctttgatcatggttgctttcatgtgaataaattcttgtatagttggggcca 4742506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 221 - 333
Target Start/End: Complemental strand, 4742508 - 4742396
Alignment:
Q  221 ccagattttgctgactgcaaagcgtaggagaattctttggacggctgaaggaaaaactctcaaggtttaaacattgtattgttcctagtttggaagatct 320  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4742508 ccagattttgctgactggaaagcgtaggagaattctttggacggctgaaggaaaaactctcaaggtttaaacattgtattgttcctagtttggaagatct 4742409  T
Q  321 tgtgttattgcta 333  Q
    |||||||||||||    
T  4742408 tgtgttattgcta 4742396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 570 - 746
Target Start/End: Original strand, 7124374 - 7124548
Alignment:
Q  570 tgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgttgtgcatctgctcaatatattctaccgaagac 669  Q
    |||||||||||||||| ||||||||||||| ||  ||||||||||||| ||||||| || ||||||  | || | ||||| ||||| ||| | || ||||    
T  7124374 tgaagttatcctacattcaataataatgcgccacatgtcatgtgtgttgattgttgaatggtatgtagtatgtacctgctaaatatgttccatcgtagac 7124473  T
Q  670 taattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    ||| |||||||||||||||||||||||  |||||| ||||||||||| ||||||||||  |||||||||||||||||    
T  7124474 taactttattagattttttgaaccatcaaattaagcacctcactagtgttattgtgtt--ctttcacactatattta 7124548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 21076112 - 21076027
Alignment:
Q  203 tttatattacagctccaaccagattttgctgactgcaaagcgtaggagaattctttggacggctgaaggaaaaactctcaaggttt 288  Q
    |||| ||||| ||||||||||||||||| |||  | ||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  21076112 tttaaattacggctccaaccagattttgttgatcggaaagcgtagaagaattctttggacggttgaaggaaaaactctcaaggttt 21076027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 845 - 897
Target Start/End: Complemental strand, 4181011 - 4180959
Alignment:
Q  845 ctatgataaactgttcataaaacccgtccaccatatccaccaccatgatgatg 897  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4181011 ctatgataaactgttcataaaacccgtccaccatatccaccaccatgatgatg 4180959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 21052890 - 21052805
Alignment:
Q  203 tttatattacagctccaaccagattttgctgactgcaaagcgtaggagaattctttggacggctgaaggaaaaactctcaaggttt 288  Q
    |||| ||||| |||||||||||||||||||||  | ||||||||| ||||||||||| |||| ||||||||||||| || ||||||    
T  21052890 tttaaattacggctccaaccagattttgctgatcggaaagcgtagaagaattctttgaacggttgaaggaaaaactgtccaggttt 21052805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 286 - 333
Target Start/End: Complemental strand, 21052680 - 21052633
Alignment:
Q  286 tttaaacattgtattgttcctagtttggaagatcttgtgttattgcta 333  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  21052680 tttagacattgtaatgttcctagtttggaagatcttgtgttattgcta 21052633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 286 - 333
Target Start/End: Complemental strand, 21075902 - 21075855
Alignment:
Q  286 tttaaacattgtattgttcctagtttggaagatcttgtgttattgcta 333  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  21075902 tttagacattgtaatgttcctagtttggaagatcttgtgttattgcta 21075855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 539 - 746
Target Start/End: Complemental strand, 945171 - 944973
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    ||||||||||||  |||||||||       |||||||||  |||||| ||||||||||||||||  ||||||||||| | ||||||||||   || |  |    
T  945171 tatggtgaagttcctcaattgacttttttgatgaagttactctacattcaataataatgcgtcacatgtcatgtgtgctgattgttgcatgaaatttact 945072  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
    ||| | |||||||||||  || |||| ||||||         | |||||||||||||| ||||||| |||||| |||| ||||||||||| |||| |||     
T  945071 gtgtacctgctcaatatgctccaccgtagacta---------gcttttttgaaccatcagattaagcacctcattagtgttattgtgttgtcttttacat 944981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 678 - 746
Target Start/End: Complemental strand, 12945594 - 12945526
Alignment:
Q  678 ttagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    ||||||||||| || |||  ||||||| |  |||||||| |||||||||||||||||||||||||||||    
T  12945594 ttagattttttaaatcattagattaagcatttcactagtattattgtgttgcctttcacactatattta 12945526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 332 - 363
Target Start/End: Complemental strand, 4742364 - 4742333
Alignment:
Q  332 taagaaaaaagtcatatgttatgttccataaa 363  Q
    ||||||||||||||||||||||||||||||||    
T  4742364 taagaaaaaagtcatatgttatgttccataaa 4742333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 182; Significance: 6e-98; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 537 - 747
Target Start/End: Complemental strand, 47329741 - 47329531
Alignment:
Q  537 tttatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtg 636  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47329741 tttatggtgaagttattcaattgacttttttgatgaagttatcctacatccaataataatgcgccatgtgtcatgtgtgtttattgttgcatagtatgtg 47329642  T
Q  637 ttgtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcac 736  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47329641 ttgtgcatctgctcaatatattctaccgaagactagttttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcac 47329542  T
Q  737 actatatttaa 747  Q
    |||||||||||    
T  47329541 actatatttaa 47329531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 539 - 746
Target Start/End: Complemental strand, 34095926 - 34095719
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    ||||||||||| |||||||||||        |||||||||||||||| ||||||||||||| || |||||||||||||| ||||||  || ||||||  |    
T  34095926 tatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataatgcgccacgtgtcatgtgtgttgattgttaaatggtatgtcgt 34095827  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
     || | ||||| ||||| ||| |||| ||||||  ||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||    
T  34095826 ttgtacctgctaaatatgttccaccgtagactagctttattagattttttgaaccatcagattaagcatctcactagtgttattgtgttgcctttcacac 34095727  T
Q  739 tatattta 746  Q
    ||||||||    
T  34095726 tatattta 34095719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 539 - 746
Target Start/End: Complemental strand, 6444236 - 6444030
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    ||||||||||| |||||||||||        |||||||||||||||| ||||||||||||| ||  ||||||||||||| ||||||| || ||||||  |    
T  6444236 tatggtgaagtcattcaattgactttttcggtgaagttatcctacattcaataataatgcgccacatgtcatgtgtgttgattgttgaatggtatgtagt 6444137  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
     || | ||||| ||||| ||  | || | ||||| ||||||| ||||||| |||||||  |||||| ||||||||||| ||||||||||| |||||||||    
T  6444136 atgtacctgctaaatatgtttcatcgtaaactaactttattaaatttttt-aaccatcaaattaagcacctcactagtgttattgtgttgtctttcacac 6444038  T
Q  739 tatattta 746  Q
    ||||||||    
T  6444037 tatattta 6444030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 646 - 746
Target Start/End: Complemental strand, 29263364 - 29263264
Alignment:
Q  646 tgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattt 745  Q
    |||||||||| ||| |||  |||||| ||||||||||||||||||||||||  |||||| ||||||||  | |||||||||||||||||||||| |||||    
T  29263364 tgctcaatatgttccaccatagactagttttattagattttttgaaccatcaaattaagcacctcactgttgttattgtgttgcctttcacactgtattt 29263265  T
Q  746 a 746  Q
    |    
T  29263264 a 29263264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 845 - 897
Target Start/End: Complemental strand, 47329433 - 47329381
Alignment:
Q  845 ctatgataaactgttcataaaacccgtccaccatatccaccaccatgatgatg 897  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47329433 ctatgataaactgttcataaaacccgtccaccatatccaccaccatgatgatg 47329381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 678 - 746
Target Start/End: Complemental strand, 19465382 - 19465314
Alignment:
Q  678 ttagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    |||||||||||||| |||||||||||  || |||||||| |||||||||||||||||||||||||||||    
T  19465382 ttagattttttgaatcatcggattaaacacttcactagtgttattgtgttgcctttcacactatattta 19465314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 678 - 746
Target Start/End: Original strand, 29830400 - 29830468
Alignment:
Q  678 ttagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    |||||||||||||| |||| ||||||  || ||| | || ||||||||||| |||||||||||||||||    
T  29830400 ttagattttttgaatcatcagattaaacacttcattggtgttattgtgttgtctttcacactatattta 29830468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 2e-95; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 537 - 747
Target Start/End: Complemental strand, 5234802 - 5234592
Alignment:
Q  537 tttatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtg 636  Q
    |||||||||||||||||||||||||       ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5234802 tttatggtgaagttattcaattgacttttttgatgaagttatcctacattcaataataatgcgccatgtgtcatgtgtgtttattgttgcatagtatgtg 5234703  T
Q  637 ttgtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcac 736  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5234702 ttgtgcatctgctcaatatattctaccgaagactagttttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcac 5234603  T
Q  737 actatatttaa 747  Q
    |||||||||||    
T  5234602 actatatttaa 5234592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 539 - 747
Target Start/End: Complemental strand, 20108140 - 20107932
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    |||||||||||||||||||||||        |||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||    
T  20108140 tatggtgaagttattcaattgacttttttggtgaagttatcttacatccaataataatgcgccatatgtcatgtgtgtttattgttgcataatatgtgtt 20108041  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
    ||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  20108040 gtgcatctgctcaatatgttctaccgtagactagttttattagattttttgaaccatcggattaaacacctcactagtcttattgtgttgcctttcacac 20107941  T
Q  739 tatatttaa 747  Q
    |||||||||    
T  20107940 tatatttaa 20107932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 539 - 746
Target Start/End: Original strand, 29702398 - 29702605
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    |||||||||||| ||||||||||        |||||||| |||| || ||||||||||| | ||| ||||||||||| | |||||||||||||||||| |    
T  29702398 tatggtgaagttgttcaattgactttttcggtgaagttaccctaaattcaataataatgtgccatatgtcatgtgtgctgattgttgcatagtatgtgat 29702497  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
    |||||||||||| |||| ||| |||| |||||| |||||||||||||||||||| ||| ||||||  ||||||||||| |||||||||||  ||||||||    
T  29702498 gtgcatctgctcgatatgttccaccgtagactagttttattagattttttgaactatcagattaaacacctcactagtattattgtgttgattttcacac 29702597  T
Q  739 tatattta 746  Q
    ||||||||    
T  29702598 tatattta 29702605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 570 - 746
Target Start/End: Complemental strand, 55406424 - 55406249
Alignment:
Q  570 tgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgttgtgcatctgctcaatatattctaccgaagac 669  Q
    |||||||| ||||||||||||||||||| | || || ||||||||||| |||||||||  ||||    |||| | ||||||||||| ||| |||| ||||    
T  55406424 tgaagttaccctacatccaataataatgtgccacgtatcatgtgtgttgattgttgcacggtatccactgtgtacctgctcaatatgttc-accgtagac 55406326  T
Q  670 taattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    ||||||||||||||||||||||| ||| ||||||||  ||||||||| ||||||||||| |||||||||| ||||||    
T  55406325 taattttattagattttttgaacaatcagattaagtgtctcactagtgttattgtgttgtctttcacactgtattta 55406249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 580 - 746
Target Start/End: Complemental strand, 53284296 - 53284130
Alignment:
Q  580 ctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgttgtgcatctgctcaatatattctaccgaagactaattttatt 679  Q
    ||||||| |||||||||||| ||  ||||||||||| | |||||||||||||||||| |||||||||  || |||| ||| |  | ||| || |||||||    
T  53284296 ctacatctaataataatgcgccacatgtcatgtgtgctgattgttgcatagtatgtgatgtgcatctagtcgatatgttccagtgtagattagttttatt 53284197  T
Q  680 agattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    || |||||||||| ||| ||||||| |||| |||||| ||||||| |||  ||||||||||||||||    
T  53284196 aggttttttgaactatcagattaagcaccttactagtgttattgtcttgattttcacactatattta 53284130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 539 - 746
Target Start/End: Complemental strand, 12945548 - 12945349
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    |||||||||||| ||||||||||       ||||||||||||||||||||||||||||||| ||  |||||||||||   ||||| | || ||||||       
T  12945548 tatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataatgcgccacatgtcatgtgtgcaaattgtggaatggtatgtacc 12945449  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
    ||| | ||||||||||| ||| |||| ||||||| |        |||||||||||||| ||||||| || |||||| | |||| ||||||||||||||||    
T  12945448 gtgtacctgctcaatatgttccaccgtagactaact--------ttttttgaaccatcagattaagcacatcactaatgttatcgtgttgcctttcacac 12945357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 569 - 746
Target Start/End: Original strand, 33213454 - 33213622
Alignment:
Q  569 atgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgttgtgcatctgctcaatatattctaccgaaga 668  Q
    ||||||||| | ||||||||||||||||| ||||| ||||||||||| | |||||||||| |||||| ||||| | ||||||||||| ||| | || ||     
T  33213454 atgaagttaccatacatccaataataatgtgtcatatgtcatgtgtgctgattgttgcatggtatgtattgtgtacctgctcaatatgttccatcgtag- 33213552  T
Q  669 ctaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
            ||||  |||||||||||||| ||||||  || |||||||| |||||||||||  ||||||||||||||||    
T  33213553 --------attatcttttttgaaccatcagattaaacacatcactagtgttattgtgttgtttttcacactatattta 33213622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 845 - 897
Target Start/End: Complemental strand, 5234494 - 5234442
Alignment:
Q  845 ctatgataaactgttcataaaacccgtccaccatatccaccaccatgatgatg 897  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5234494 ctatgataaactgttcataaaacccgtccaccatatccaccaccatgatgatg 5234442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 845 - 897
Target Start/End: Complemental strand, 20107827 - 20107775
Alignment:
Q  845 ctatgataaactgttcataaaacccgtccaccatatccaccaccatgatgatg 897  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20107827 ctatgataaactgttcataaaacccgtccaccatatccaccaccatgatgatg 20107775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 539 - 655
Target Start/End: Complemental strand, 29835853 - 29835737
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    ||||||||||| |||||||||||        |||||||| ||||||||||||||||||||||||  || |||||||| | |||||||||| |||||| ||    
T  29835853 tatggtgaagtcattcaattgactttttcagtgaagttaccctacatccaataataatgcgtcacatggcatgtgtgctgattgttgcatggtatgtatt 29835754  T
Q  639 gtgcatctgctcaatat 655  Q
    ||| | |||||||||||    
T  29835753 gtgtacctgctcaatat 29835737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 678 - 746
Target Start/End: Original strand, 50359639 - 50359707
Alignment:
Q  678 ttagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    ||||||||||| || ||||| |||||  || |||||||| ||||||||||||||||| |||||||||||    
T  50359639 ttagatttttttaatcatcgaattaaacacttcactagtattattgtgttgcctttcccactatattta 50359707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 678 - 746
Target Start/End: Original strand, 50646785 - 50646853
Alignment:
Q  678 ttagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    |||||||||||||| ||||| |||||  || ||||| || |||||||| ||||||||||||||||||||    
T  50646785 ttagattttttgaatcatcgaattaaacacttcactggtgttattgtggtgcctttcacactatattta 50646853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 690 - 746
Target Start/End: Original strand, 31654779 - 31654835
Alignment:
Q  690 aaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    ||||||| ||||||| ||||||||||| ||||| ||||||| |||||| ||||||||    
T  31654779 aaccatcagattaagcacctcactagtgttattatgttgcccttcacattatattta 31654835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 678 - 746
Target Start/End: Original strand, 22426894 - 22426959
Alignment:
Q  678 ttagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    |||||||||||||| ||||| |||||    |||  |||| |||||||||||||||||||||||||||||    
T  22426894 ttagattttttgaatcatcgaattaaa---ctctttagtgttattgtgttgcctttcacactatattta 22426959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 683 - 741
Target Start/End: Complemental strand, 29835719 - 29835661
Alignment:
Q  683 ttttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactat 741  Q
    |||||||||||||| ||||||  ||||||||||| ||||| |||||  |||||||||||    
T  29835719 ttttttgaaccatcagattaaacacctcactagtgttattttgttgtttttcacactat 29835661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 2e-94; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 539 - 747
Target Start/End: Complemental strand, 37080800 - 37080592
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37080800 tatggtgaagttattcaattgacttttttgatgaagttatcctacatccaataataatgcgccatgtgtcatgtgtgtttattgttgcatagtatgtgtt 37080701  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37080700 gtgcatctgctcaatatattctaccgaagactagttttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgtctttcacac 37080601  T
Q  739 tatatttaa 747  Q
    |||||||||    
T  37080600 tatatttaa 37080592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 570 - 696
Target Start/End: Complemental strand, 7091153 - 7091027
Alignment:
Q  570 tgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgttgtgcatctgctcaatatattctaccgaagac 669  Q
    |||||||| ||||||||||||||||||| | || || ||| ||||||| ||||||| ||  |||||  |||| | ||||||||||||||| |||| ||||    
T  7091153 tgaagttaccctacatccaataataatgtgccacgtatcacgtgtgttgattgttgaatgttatgtaatgtgtacctgctcaatatattccaccgtagac 7091054  T
Q  670 taattttattagattttttgaaccatc 696  Q
    ||| |||||||||||||||||||||||    
T  7091053 taactttattagattttttgaaccatc 7091027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 570 - 696
Target Start/End: Original strand, 33751546 - 33751672
Alignment:
Q  570 tgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgttgtgcatctgctcaatatattctaccgaagac 669  Q
    |||||||| ||||||||||||||||||| | ||  | ||| ||||||| ||||||| ||  |||||  |||| | ||||||||||||||| |||| ||||    
T  33751546 tgaagttaccctacatccaataataatgtgccacatatcacgtgtgttgattgttgaatgttatgtaatgtgtacctgctcaatatattccaccgtagac 33751645  T
Q  670 taattttattagattttttgaaccatc 696  Q
    ||| |||||||||||||||||||||||    
T  33751646 taactttattagattttttgaaccatc 33751672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 845 - 897
Target Start/End: Complemental strand, 37080494 - 37080442
Alignment:
Q  845 ctatgataaactgttcataaaacccgtccaccatatccaccaccatgatgatg 897  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37080494 ctatgataaactgttcataaaacccgtccaccatatccaccaccatgatgatg 37080442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 678 - 746
Target Start/End: Complemental strand, 14101911 - 14101843
Alignment:
Q  678 ttagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    |||||||||||||| |||||||||||  |  |||||||| ||||||||||||||||| |||||||||||    
T  14101911 ttagattttttgaatcatcggattaaacagttcactagtgttattgtgttgcctttcccactatattta 14101843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 414
Target Start/End: Original strand, 10018312 - 10018367
Alignment:
Q  359 ataaatttctttatcaaacatataataaaaaatgatttttaccatgccttttggca 414  Q
    ||||| |||||||||||||| |||||  |||||||||||||  |||||||||||||    
T  10018312 ataaacttctttatcaaacaaataattgaaaatgatttttaatatgccttttggca 10018367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 856 - 897
Target Start/End: Complemental strand, 7090892 - 7090851
Alignment:
Q  856 tgttcataaaacccgtccaccatatccaccaccatgatgatg 897  Q
    |||||||| ||||||||||||||||||| |||||| ||||||    
T  7090892 tgttcatacaacccgtccaccatatccatcaccatcatgatg 7090851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 738
Target Start/End: Original strand, 30778423 - 30778500
Alignment:
Q  661 accgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
    |||| ||| ||||||||||||||| ||| ||| ||  ||||||| ||||||||  ||||||| |||| ||||||||||    
T  30778423 accgtagattaattttattagattgtttaaactattagattaagcacctcacttatcttattatgttacctttcacac 30778500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 856 - 897
Target Start/End: Original strand, 33751807 - 33751848
Alignment:
Q  856 tgttcataaaacccgtccaccatatccaccaccatgatgatg 897  Q
    |||||||| ||||||||||||||||||| |||||| ||||||    
T  33751807 tgttcatacaacccgtccaccatatccatcaccatcatgatg 33751848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 9e-51; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 539 - 746
Target Start/End: Original strand, 1786495 - 1786702
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    |||||||||||| ||||||||||        |||||||| | |||||| |||||||||||| || |||||||||||| | |||||||||||||||||| |    
T  1786495 tatggtgaagttgttcaattgactttttttgtgaagttaccatacatctaataataatgcgccacgtgtcatgtgtgctgattgttgcatagtatgtgat 1786594  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
    |||||| |||||||||| ||| |||| | |||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||  ||||||||    
T  1786595 gtgcatttgctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaagcacctcactagtgttattgtgttgattttcacac 1786694  T
Q  739 tatattta 746  Q
    ||||||||    
T  1786695 tatattta 1786702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 570 - 696
Target Start/End: Original strand, 3877609 - 3877735
Alignment:
Q  570 tgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgttgtgcatctgctcaatatattctaccgaagac 669  Q
    |||||||| ||||||||||||||||||| | || || ||||||||||| ||||||| ||  |||||  |||| | ||||||||||||||| |||| ||||    
T  3877609 tgaagttaccctacatccaataataatgtgccacgtatcatgtgtgttgattgttgaatgttatgtaatgtgtacctgctcaatatattccaccgtagac 3877708  T
Q  670 taattttattagattttttgaaccatc 696  Q
    ||| |||||||||||||||||||||||    
T  3877709 taactttattagattttttgaaccatc 3877735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 578 - 746
Target Start/End: Complemental strand, 30089219 - 30089060
Alignment:
Q  578 tcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgttgtgcatctgctcaatatattctaccgaagactaatttta 677  Q
    |||||||||||||||||||| | ||  ||||||||||| | ||||||||||  |||||  |||| | ||||||||||| ||| |||| ||||||||        
T  30089219 tcctacatccaataataatgtgccacatgtcatgtgtgctgattgttgcatgatatgtactgtgtacctgctcaatatgttccaccgtagactaat---- 30089124  T
Q  678 ttagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
         |||||||||||||| ||||||  || |||||||| ||||| ||||| |||||||||||||||||    
T  30089123 -----ttttttgaaccatcagattaaacacttcactagtgttattttgttgtctttcacactatattta 30089060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 646 - 746
Target Start/End: Original strand, 30936786 - 30936886
Alignment:
Q  646 tgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattt 745  Q
    |||||||||| ||| |||  | |||| ||||||||||||||||||||||||  |||||| ||||||||  | |||||||||||||||||||||| |||||    
T  30936786 tgctcaatatgttccaccataaactagttttattagattttttgaaccatcaaattaagcacctcactgttgttattgtgttgcctttcacactgtattt 30936885  T
Q  746 a 746  Q
    |    
T  30936886 a 30936886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 539 - 746
Target Start/End: Original strand, 13800649 - 13800847
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    ||||||||||| |||||||||||        ||||||||  |||||||||||||||||||||||  || ||| |||| | |||||||||| |||||| ||    
T  13800649 tatggtgaagtcattcaattgactttttcagtgaagttactctacatccaataataatgcgtcacatggcatttgtgctgattgttgcatggtatgtatt 13800748  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
    ||| | ||||||||||| ||| | || ||||         ||| |||||||||||||| ||||||  ||||||||| | |||||||||||  |||| |||    
T  13800749 gtgtacctgctcaatatgttccatcgtagac---------tagcttttttgaaccatcagattaaacacctcactaatgttattgtgttgtttttcgcac 13800839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 856 - 897
Target Start/End: Original strand, 3877870 - 3877911
Alignment:
Q  856 tgttcataaaacccgtccaccatatccaccaccatgatgatg 897  Q
    |||||||| ||||||||||||||||||| |||||| ||||||    
T  3877870 tgttcatacaacccgtccaccatatccatcaccatcatgatg 3877911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 539 - 746
Target Start/End: Complemental strand, 39885910 - 39885703
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    |||||||||||| ||||||||||        |||||||| |||| || ||||||||||| | ||  ||||||||||| | |||||||||||||||||| |    
T  39885910 tatggtgaagttgttcaattgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtgtgctgattgttgcatagtatgtgat 39885811  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
    |||||||||||| |||| ||| |||| |||||| |||||||||||||||||||| ||| ||||||  ||||||||||| |||||||||||  ||||||||    
T  39885810 gtgcatctgctcgatatgttccaccgtagactagttttattagattttttgaactatcagattaaacacctcactagtattattgtgttgattttcacac 39885711  T
Q  739 tatattta 746  Q
    ||||||||    
T  39885710 tatattta 39885703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 570 - 742
Target Start/End: Original strand, 31480500 - 31480663
Alignment:
Q  570 tgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgttgtgcatctgctcaatatattctaccgaagac 669  Q
    |||||||| ||||||||||||||||||||||||  ||||||||||| | |||||||||| |||||| ||||| | ||||||||||| ||| | || ||||    
T  31480500 tgaagttaccctacatccaataataatgcgtcacatgtcatgtgtgctgattgttgcatggtatgtattgtgtacctgctcaatatgttccatcgtagac 31480599  T
Q  670 taattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactata 742  Q
             ||| |||||||||||||| ||||||| ||||||||| | |||||||||||  ||||||||||||    
T  31480600 ---------tagcttttttgaaccatcagattaagcacctcactaatgttattgtgttgtttttcacactata 31480663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 539 - 746
Target Start/End: Original strand, 41406001 - 41406199
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    |||||||||||| ||||||||||       ||||||||||||||||||||||||||||||| ||  |||||||||||   ||||| | || ||||||       
T  41406001 tatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataatgcgccacatgtcatgtgtgcaaattgtggaatggtatgtacc 41406100  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
    ||| | ||||||||||| ||| |||| |||||||          |||||||||||||| ||||||| || |||||| | |||| ||||||||||||||||    
T  41406101 gtgtacctgctcaatatgttccaccgtagactaa---------cttttttgaaccatcagattaagcacatcactaatgttatcgtgttgcctttcacac 41406191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 539 - 746
Target Start/End: Complemental strand, 40321568 - 40321370
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    |||||||||||| ||||||||||       ||||||||||||||||||||||||||||||| ||  |||||||||||   ||||| | || ||||||       
T  40321568 tatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataatgcgccacatgtcatgtgtgcaaattgtggaatggtatgtacc 40321469  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
    ||| | ||||||||||| ||| |||| |||||||          |||||||||||||| ||||||  || |||||| | |||| ||||||||||||||||    
T  40321468 gtgtacctgctcaatatgttccaccgtagactaa---------cttttttgaaccatcagattaaacacatcactaatgttatcgtgttgcctttcacac 40321378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 539 - 746
Target Start/End: Complemental strand, 1836088 - 1835890
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    |||||||||||| |||||||||        ||||||||||||||||||||||||||||||| ||  |||||||||||   ||||| | || ||||||       
T  1836088 tatggtgaagttgttcaattgattttttcgatgaagttatcctacatccaataataatgcgccacatgtcatgtgtgcaaattgtggaatggtatgtacc 1835989  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
    ||| | ||||||||||| ||| |||| ||||||| |||         ||||||||||| ||||||  || |||||| | |||| ||||||||||||||||    
T  1835988 gtgtacctgctcaatatgttccaccgtagactaacttt---------tttgaaccatcagattaaacacatcactaatgttatcgtgttgcctttcacac 1835898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 678 - 746
Target Start/End: Complemental strand, 30628626 - 30628558
Alignment:
Q  678 ttagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    ||||||||||| || |||| ||||||| |  |||||||| |||||||||||||||||||||||||||||    
T  30628626 ttagattttttaaatcatcagattaagcatttcactagtattattgtgttgcctttcacactatattta 30628558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 3e-41; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 539 - 746
Target Start/End: Original strand, 42063012 - 42063219
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    ||||||||||| |||||||||||        |||||||||||||||| |||||||||| || || |||||||||||||| ||||||| || ||||||  |    
T  42063012 tatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataatacgccacgtgtcatgtgtgttgattgttgaatggtatgtcgt 42063111  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
     || | ||| | ||||| ||| |||| ||||||  ||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||    
T  42063112 atgtacctgttaaatatgttccaccgtagactagctttattagattttttgaaccatcagattaagcatctcactagtgttattgtgttgcctttcacac 42063211  T
Q  739 tatattta 746  Q
    ||||||||    
T  42063212 tatattta 42063219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 539 - 746
Target Start/End: Original strand, 47028109 - 47028316
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    ||||||||||| |||||||||||        |||||||||||||||| |||||||||| || || |||| ||||||||| ||||||| || ||||||  |    
T  47028109 tatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataattcgccacgtgtaatgtgtgttgattgttgaatggtatgtagt 47028208  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
     || | ||||| ||||| ||| |||| ||||||  ||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||     
T  47028209 atgtacctgctaaatatgttccaccgtagactagctttattatattttttgaaccatcagattaagcacctcactagtgttattgtgttgcctttcacat 47028308  T
Q  739 tatattta 746  Q
    ||||||||    
T  47028309 tatattta 47028316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 539 - 746
Target Start/End: Original strand, 15530069 - 15530280
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    |||||||||||| ||||||||||        |||||||| |||| || |||||| |||| ||||  ||||||||||| | |||||||||||||||||| |    
T  15530069 tatggtgaagttgttcaattgactttttcggtgaagttaccctaaattcaataaaaatgtgtcacatgtcatgtgtgctgattgttgcatagtatgtgat 15530168  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcgg----attaagtacctcactagtcttattgtgttgcctttc 734  Q
    |||||||||||| |||| ||| |||| |||||| |||||||||||||||||||| ||| |    |||||  ||||||||||| |||||||||||  ||||    
T  15530169 gtgcatctgctcgatatgttccaccgtagactagttttattagattttttgaactatcagatttattaaacacctcactagtattattgtgttgattttc 15530268  T
Q  735 acactatattta 746  Q
    ||||||||||||    
T  15530269 acactatattta 15530280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 537 - 746
Target Start/End: Original strand, 45988123 - 45988332
Alignment:
Q  537 tttatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtg 636  Q
    ||||||||||||| |||||||||||        |||||||||||||||| ||||||| ||||| ||  ||||||||||||| ||||||| || ||| ||     
T  45988123 tttatggtgaagtcattcaattgactttttcggtgaagttatcctacattcaataatgatgcgccacatgtcatgtgtgttgattgttgaatggtacgta 45988222  T
Q  637 ttgtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcac 736  Q
     | || | ||||| ||||| || ||  | ||||||| ||||||||||||||| |||||||  |||||| ||||||||||| ||||||||||| |||||||    
T  45988223 gtatgtacctgctaaatatgttttattgtagactaactttattagattttttaaaccatcaaattaagcacctcactagtgttattgtgttgtctttcac 45988322  T
Q  737 actatattta 746  Q
    ||||||||||    
T  45988323 actatattta 45988332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 539 - 746
Target Start/End: Original strand, 24226879 - 24227077
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    |||||||||||| ||||||||||       ||||||||||||||||||||||||||||||| ||  |||||||||||   ||||| | || ||||||       
T  24226879 tatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataatgcgccacatgtcatgtgtgcaaattgtggaatggtatgtacc 24226978  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
    ||| ||||||||||||| ||| |||| |||||||          |||||||||||||| ||||||| || |||||| | |||| ||||||||||||||||    
T  24226979 gtgtatctgctcaatatgttccaccgtagactaa---------cttttttgaaccatcagattaagcacatcactaatgttatcgtgttgcctttcacac 24227069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 678 - 746
Target Start/End: Complemental strand, 27296228 - 27296160
Alignment:
Q  678 ttagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    |||||||||||||| |||||||||||  || |||||||| |||||||||||||||||||||||||||||    
T  27296228 ttagattttttgaatcatcggattaaacacttcactagtgttattgtgttgcctttcacactatattta 27296160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 677 - 746
Target Start/End: Complemental strand, 28683010 - 28682941
Alignment:
Q  677 attagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    ||||| |||||||||||||||||||||| |  |||||||| |||||||||||||||||||||| ||||||    
T  28683010 attagcttttttgaaccatcggattaagcaaatcactagtgttattgtgttgcctttcacactgtattta 28682941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 678 - 746
Target Start/End: Complemental strand, 4922449 - 4922381
Alignment:
Q  678 ttagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    |||||||||||||| |||||||||||  || |||||||| ||||||||||| ||||| |||||||||||    
T  4922449 ttagattttttgaatcatcggattaaacacttcactagtgttattgtgttgactttcccactatattta 4922381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 452 - 507
Target Start/End: Complemental strand, 35364775 - 35364720
Alignment:
Q  452 aaaagtatcacgaaaatattccgatagtgtaattgtttaacacctttccttaatta 507  Q
    ||||||||||||||||||| |||||||| ||||| || |||| |||||||||||||    
T  35364775 aaaagtatcacgaaaatatcccgatagtataattattcaacatctttccttaatta 35364720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 746
Target Start/End: Complemental strand, 42980164 - 42980111
Alignment:
Q  693 catcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    |||| ||||||| ||||||||||| ||||| ||||||| |||||||||||||||    
T  42980164 catcagattaagcacctcactagtgttattatgttgcccttcacactatattta 42980111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 570 - 602
Target Start/End: Complemental strand, 28683119 - 28683087
Alignment:
Q  570 tgaagttatcctacatccaataataatgcgtca 602  Q
    |||||||||||||||||||||||||||||||||    
T  28683119 tgaagttatcctacatccaataataatgcgtca 28683087  T

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Target: scaffold0662 (Bit Score: 83; Significance: 8e-39; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 539 - 746
Target Start/End: Original strand, 6988 - 7195
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    ||||||||||| |||||||||||        |||||||||||||||| |||||||||| || || |||| ||||||||| ||||||| || ||||||  |    
T  6988 tatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataattcgccacgtgtaatgtgtgttgattgttgaatggtatgtagt 7087  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
     || | ||||| ||||| ||| |||| ||||||  ||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||     
T  7088 atgtacctgctaaatatgttccaccgtagactagctttattatattttttgaaccatcagattaagcacctcactagtgttattgtgttgcctttcacat 7187  T
Q  739 tatattta 746  Q
    ||||||||    
T  7188 tatattta 7195  T

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Target: chr1 (Bit Score: 83; Significance: 8e-39; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 539 - 746
Target Start/End: Original strand, 45319616 - 45319823
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    ||||||||||| |||||||||||        |||||||||| ||||| ||||||||||||| || ||||||| |||||| ||||||| || ||||||  |    
T  45319616 tatggtgaagtcattcaattgacttttttggtgaagttatcttacattcaataataatgcgccacgtgtcatttgtgttgattgttgaattgtatgttgt 45319715  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
     || | ||||| ||||| ||| |||| ||||||  ||||||||||||||||||| |||  |||||| ||||||||||| |||||||||||||||||||||    
T  45319716 atgtacctgctaaatatgttccaccgtagactagctttattagattttttgaactatcaaattaagcacctcactagtgttattgtgttgcctttcacac 45319815  T
Q  739 tatattta 746  Q
    ||||||||    
T  45319816 tatattta 45319823  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 539 - 746
Target Start/End: Complemental strand, 47036339 - 47036141
Alignment:
Q  539 tatggtgaagttattcaattgacnnnnnnnatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgtt 638  Q
    ||||||||||| |||||||||||       ||||||||| | ||||||||||||||||||||||  ||||||||||  | |||||||||| |||||| ||    
T  47036339 tatggtgaagtcattcaattgacttcttcaatgaagttaccatacatccaataataatgcgtcacatgtcatgtgttctgattgttgcatggtatgtatt 47036240  T
Q  639 gtgcatctgctcaatatattctaccgaagactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacac 738  Q
    ||| | ||||| ||||| ||| | || ||||         ||  |||||||||||||| ||||||  || ||| |||| |||||||||||  ||||||||    
T  47036239 gtgtacctgcttaatatgttccatcgtagac---------tatcttttttgaaccatcagattaaacacatcaatagtgttattgtgttgtttttcacac 47036149  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 570 - 746
Target Start/End: Complemental strand, 49410565 - 49410398
Alignment:
Q  570 tgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgttgtgcatctgctcaatatattctaccgaagac 669  Q
    |||||||| ||||||||||||||||||||| ||  ||||||||||| | ||||| | || ||||||   ||| | ||||||||||| ||| || | | ||    
T  49410565 tgaagttaccctacatccaataataatgcgccacatgtcatgtgtgctgattgtggaatggtatgtaccgtgtacctgctcaatatgttccactgtatac 49410466  T
Q  670 taattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    ||         | |||||||||||||| ||||||| |||||||||||  |||||||||| |||||||||||||||||    
T  49410465 ta---------gcttttttgaaccatcagattaagcacctcactagtgctattgtgttgtctttcacactatattta 49410398  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 683 - 746
Target Start/End: Complemental strand, 39242561 - 39242498
Alignment:
Q  683 ttttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    |||||||||||||| ||||||  ||||||||||| ||||||||||||||||| |||||||||||    
T  39242561 ttttttgaaccatcagattaaacacctcactagtgttattgtgttgcctttcgcactatattta 39242498  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 678 - 746
Target Start/End: Complemental strand, 27289823 - 27289755
Alignment:
Q  678 ttagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    |||||||||||||| |||| ||||||  || |||||||| ||||||||||| |||||||||||||||||    
T  27289823 ttagattttttgaatcatcagattaaaaacttcactagtgttattgtgttgtctttcacactatattta 27289755  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 682 - 746
Target Start/End: Original strand, 52382779 - 52382843
Alignment:
Q  682 attttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    |||||||||  |||||||||||  || |||||||| |||||||||||||||||||||||||||||    
T  52382779 attttttgactcatcggattaaacacttcactagtgttattgtgttgcctttcacactatattta 52382843  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 605
Target Start/End: Original strand, 22105432 - 22105467
Alignment:
Q  570 tgaagttatcctacatccaataataatgcgtcatgt 605  Q
    |||||||||||||||||||||||||||||| |||||    
T  22105432 tgaagttatcctacatccaataataatgcgccatgt 22105467  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 683 - 746
Target Start/End: Original strand, 22105547 - 22105610
Alignment:
Q  683 ttttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    |||||||||| ||| ||||||| || |||||||| || ||| ||| ||||||||||||||||||    
T  22105547 ttttttgaactatcagattaagcacatcactagtgttgttgagtttcctttcacactatattta 22105610  T

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Target: scaffold0896 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 570 - 746
Target Start/End: Complemental strand, 1990 - 1815
Alignment:
Q  570 tgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtgttgtgcatctgctcaatatattctaccgaagac 669  Q
    |||||||||||||||| ||||||||||||| ||  ||||||||||||| ||||||| || ||||||  | || | ||||| ||||| ||| | || ||||    
T  1990 tgaagttatcctacattcaataataatgcgccacatgtcatgtgtgttgattgttgaatggtatgtagtatgtacctgctaaatatgttccatcgtagac 1891  T
Q  670 taattttattag-attttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    ||| |||||||| |||||||||||||||  |||||| ||||||||||| ||||||||||  |||||||||||||||||    
T  1890 taactttattagtattttttgaaccatcaaattaagcacctcactagtgttattgtgtt--ctttcacactatattta 1815  T

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Target: scaffold0685 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 682 - 746
Target Start/End: Original strand, 6792 - 6856
Alignment:
Q  682 attttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatattta 746  Q
    |||||||||  |||||||||||  || |||||||| |||||||||||||||||||||||||||||    
T  6792 attttttgactcatcggattaaacacttcactagtgttattgtgttgcctttcacactatattta 6856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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