View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_high_11 (Length: 406)
Name: NF20559_high_11
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 8653016 - 8653383
Alignment:
| Q |
19 |
ttctgagaactgcatgcaatttcaaatatacatgtatatttttcatactttgtttagtatactttactactagcttgaatttcaatgaatgattaatgca |
118 |
Q |
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| T |
8653016 |
ttctgagaactgcatgcaatttcaaatatacatatatatttttcatactttgtttagtatactttactactagcttgaatttcaatgaatgattaatgca |
8653115 |
T |
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| Q |
119 |
tgaaatgtttcatataatgttcacattattgctacatatatatgtcactacaaaaaactgtgatgatgtgatatagtgaccaatttaacgatccacttag |
218 |
Q |
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| T |
8653116 |
cgaaatgtttcatataatgttcacattattgctacatat----gtcactgcaaaaaactgtgatgatgtgatatagtgaccaatttaacgatccacttag |
8653211 |
T |
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| Q |
219 |
acacgttttttaaatggatctctaagtcgatcacaaggttatttaataatcgacttagagatcgatttaaaaaatcagtagctaaacctatcactagagt |
318 |
Q |
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|| ||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8653212 |
acgcgttttttaaatggatctctaagtcgatcacaaagtcatttaataattgacttagagatccatttaaaaaatcagtagctaaacctatcactagagt |
8653311 |
T |
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| Q |
319 |
cagacactgaaatatttcgatcactaaatttttagttagtgtgtaattaataacatgtgcatgcaagtaattagtg |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8653312 |
cagacactgaaatatttcgatcactaaatttttagttagtgtg----taataacatgtgcatgcaagtaattagtg |
8653383 |
T |
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