View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_high_12 (Length: 393)
Name: NF20559_high_12
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 377
Target Start/End: Complemental strand, 50485114 - 50484752
Alignment:
| Q |
15 |
actaatcactaatttttgttatttaaagaaaaacatgataaaggaacgaatgaaattggttgattgcaattcttctttacgtgttctattctattctatc |
114 |
Q |
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| T |
50485114 |
actaatcactaatttttgttatttaaagaaaaacatgataaaggaacgaatgaaattggttgattgcaattcttctttacgtgttctattctat-----c |
50485020 |
T |
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| Q |
115 |
aaacactaaccacgtacaggttgtttattttgtgtattttaaatttgacatgcgtaccatgccatgaattctttatnnnnnnnnnnnnc-----caacaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
50485019 |
aaacactaaccacgtacaggttgtttattttgtgtattttaaatttgacatgcgtaccatgccatgaattctttattatatatattatcaaaaccaacaa |
50484920 |
T |
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| Q |
210 |
aaactctgaaatttcatctcaaattgaagcaattaagagcaaaattcattcattcggaatacattcctcaacaatttcacatcctatcgcacaacaaaca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50484919 |
aaactctgaaatttcatctcaaattgaagcaattaagagcaaaattcattcattcggaatacattcctcaacaatttcacatcctatcgcacaacaaaca |
50484820 |
T |
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| Q |
310 |
caatacacctccctataatcaaaatcaaaaaggggtttttcaaaaatcattgagtcacacatgaaatg |
377 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50484819 |
caatacacctccctatgatcaaaatcaaaaaggggtttttcaaaaatcattgagtcacacatgaaatg |
50484752 |
T |
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