View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_high_17 (Length: 339)
Name: NF20559_high_17
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 17857997 - 17857699
Alignment:
| Q |
1 |
taaaattcttgtaggccctctttgctttaaagctttaaagcctccctccaaatctagtggggcatatataacaagcttatatctacaggaatggaccata |
100 |
Q |
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| T |
17857997 |
taaaattcttgtaggccctctttgctttaaagctttaaagtctccctccaaatctagtggggcatatataacaagcttatatctacaggaatggaccata |
17857898 |
T |
|
| Q |
101 |
agaaaacagaaacaatatacccttctatttctgttcttgtttaagagtgaattagtgaaaatggtgttccatccttctagaataatgcttcttctctttg |
200 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17857897 |
agaaaacagaaacaatatacc-ttctatttttgttcttgtttaagagtgaattagtgaaaatggtgttccatccttctagaataatgcttcttctctttg |
17857799 |
T |
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| Q |
201 |
ttgggttcttaatatctattcaaccaaaggaagtgttaggcttgaaaagtttagaaattgcactaagacatagccaaaaagaccacaggataatgctgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||| |
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| T |
17857798 |
ttgggttcttaatatctattcaaccaaaggaagtgtcaggcttgaaaagtttagaaattgcactaagacataaccaaaaagatcacagggtaatgctgca |
17857699 |
T |
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