View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_high_2 (Length: 903)
Name: NF20559_high_2
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 9 - 656
Target Start/End: Original strand, 43288566 - 43289233
Alignment:
| Q |
9 |
caaagggtaaaatgcaattcaacgcgaagttgccttgcctt-----cacttacatctgcttatgaaaatatgcaagaaggttgccctagagtttgtaagc |
103 |
Q |
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| T |
43288566 |
caaagggtaaaatgcaattcaacgcgaagttgccttgccttgccttcacttacatctgcttatgaaaatatgcaagaaggttgccctagagtttgtaagc |
43288665 |
T |
|
| Q |
104 |
atgagagcaaccaattactctagcaagaatatcactagaaagagtatattgaaacaaagaaagtatattttggaatggacaa-aagtttaattttgaagc |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| |
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| T |
43288666 |
atgagagcaaccaattactctagcaagaatatcactagaaagagtgtattgaaacaaagaaagtatgttttggaatggacaagaagtttatttttgaagc |
43288765 |
T |
|
| Q |
203 |
ttgaaactggtttttggaactgatttcaaagtatgttttggaaaattcgatttcatacgcctgttaggtaatataaaagcctcttctacgaatcacaatg |
302 |
Q |
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| T |
43288766 |
ttgaaactggtttttggaactgattttaaagtatgttttggaaaattcgatttcatacgtctgttagataatataaaagcctcttctgcgaatcacaatg |
43288865 |
T |
|
| Q |
303 |
ctttagaacaccttcgtgaaaatttggtaacgttgaccaaattttgcactattcgcaaaagttactattcttattaacaatacaattggttagaaaaatt |
402 |
Q |
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| T |
43288866 |
ctttagaacaccttcgtgaaaatttggtaacgc-gaccaaattttgcactatccgcaaaagttactactgttattaacaatacaattggttagaaaaatt |
43288964 |
T |
|
| Q |
403 |
agctaaaacaaccaaccggcatcgatactaatggttaggaaactatcaaaatgtattatcactaaatctttgtttgatatgtaatatttggattcttctt |
502 |
Q |
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| T |
43288965 |
agctaaaacaaccaaccggcatttatactaatggttagaaaactattcaaatgtattatcactaaatctttgtttggtatgtaatatttggatttttctt |
43289064 |
T |
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| Q |
503 |
tcattgttttcatgttattaaatgagcagtatagtgtgacac--atgatagatacttgagtctcttaattatttagtctagaatccatgact-------- |
592 |
Q |
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| T |
43289065 |
tcttcgtttttatgttattaaatgagcagtatagtgtgacacaaatgatagatacttgagtctcttaatcatttagtctagaatccaatacttaaccggt |
43289164 |
T |
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| Q |
593 |
-----tgaaaaaatgattattggattttggtggaattgnnnnnnngaaaattttgtaagtagcagataa |
656 |
Q |
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| T |
43289165 |
gaatatgaaaaaatgattattggattttggtggaattttttttttgaaaattttgtaagtagcaaataa |
43289233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 788 - 885
Target Start/End: Original strand, 43289365 - 43289460
Alignment:
| Q |
788 |
ctcagtgactgagaataataaagcaagcaatgaatgaaagcaacgcgataaccagaatcggaacttcaccaatcattcctcttccaatttcaacaaca |
885 |
Q |
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| T |
43289365 |
ctcagtgactga--ataataaagcaagcaatgaatgaaagcaacgcgataaccagaatcggaacttcaccaatcattcctcttccaatttcaacaaca |
43289460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 732 - 777
Target Start/End: Original strand, 43289320 - 43289367
Alignment:
| Q |
732 |
gagatgaggaagtaatgttat--gttacttctcgctccttccttactc |
777 |
Q |
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| T |
43289320 |
gagatgaggaagtaatgttatatgttactgctcgctccttccttactc |
43289367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 849 - 885
Target Start/End: Original strand, 52104966 - 52105002
Alignment:
| Q |
849 |
aacttcaccaatcattcctcttccaatttcaacaaca |
885 |
Q |
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| T |
52104966 |
aacttcaccaatcattcctcttcccatttcaacaaca |
52105002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 11906231 - 11906304
Alignment:
| Q |
300 |
atgctttagaacaccttcgtgaa-aatttggtaacgttgaccaaattttgcactattcgcaaaagttactattc |
372 |
Q |
| |
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|||||||||||||||| |||||| || |||||||| ||||||| | ||||||| ||| ||||| ||||||||| |
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| T |
11906231 |
atgctttagaacacctccgtgaacaaattggtaacactgaccaattattgcactcttcacaaaaattactattc |
11906304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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