View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20559_high_21 (Length: 287)
Name: NF20559_high_21
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_high_21 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 47 - 287
Target Start/End: Original strand, 3066885 - 3067125
Alignment:
| Q |
47 |
ctaaacaagattaaacattgaagtagaatccaatctgaattttgttctgcttccacctatttacttttgtctttcatgaatttagaacaatctcattaag |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3066885 |
ctaaacaagattaaacattgaagtagaatccaatctgaattttgttctgcttccacctatttacttttgtctttcatgaatttagaacaatctcattaag |
3066984 |
T |
|
| Q |
147 |
tttgattgataaatttattttaagtgaatttaaaacattgctgcaacaaagttgcatgatatccaagagaataacagaataattgcttcaaggttgaagg |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3066985 |
tttgattgataaatttattttaagtgaatttgaaacattgctgcaacaaagttgcatgatatccaagagaataacagaataattgcttcaaggttgaagg |
3067084 |
T |
|
| Q |
247 |
agaagaacttcaccatctctaagctattgatctccaaatgt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3067085 |
agaagaacttcaccatctctaagctattgatctccaaatgt |
3067125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 3069240 - 3069328
Alignment:
| Q |
199 |
tgcatgatatccaagagaataacagaataattgcttcaaggttgaaggagaagaacttcaccatctctaagctattgatctccaaatgt |
287 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
3069240 |
tgcatgatatccaagagaatagcagactaattgcttcaaagttgaaggagaagaaattcacaatttctaagctattgatctccaaatgt |
3069328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University