View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_high_22 (Length: 286)
Name: NF20559_high_22
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 25 - 274
Target Start/End: Complemental strand, 39902646 - 39902397
Alignment:
| Q |
25 |
cagttgacacgcaaaatagaaaagtgagaagaaaaccaattaaaatgaaaacctatgtccacataattgcattcgttgtggggattattgtgaaaatgct |
124 |
Q |
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| T |
39902646 |
cagttgacacgcaaaatagaaaagtgagaagaaaaccaattaaaatgaaaacctatgtccacataattgcattcgttgtggggattattgtgaaaatgct |
39902547 |
T |
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| Q |
125 |
tggcatcatgtttgactttccataattcaatcgacacttggaaattattctttagtgttgcaaatttattgtctcagataaagtgtagcatgtggtgtat |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
39902546 |
tggcatcatgtttgactttccataattcaatcgacacttggaaattattctttagtgttgcaaattaaatgtctcagataaagtgtagcatgtggtgtat |
39902447 |
T |
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| Q |
225 |
gtgaacctgtgggaaagttgtagtttgaagctttgagaagagattgatga |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39902446 |
gtgaacctgtgggaaagttgtagtttgaagctttgagaagagattgatga |
39902397 |
T |
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