View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_high_23 (Length: 279)
Name: NF20559_high_23
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 40454498 - 40454746
Alignment:
| Q |
19 |
atgatgaagacaccaaggttgatgctaagctcaagaaacatacaagacgaaaacagagaaagaaatatagaaacctacgaaggataactttaactttgct |
118 |
Q |
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| T |
40454498 |
atgatgaagacaccaaggttgatgctaagctcaagaaacataaaagacgaaaacagagaaagaaatatagaaacctacgaaggataactttaactttgtt |
40454597 |
T |
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| Q |
119 |
gtgagttacggttggacattaaaatagttttggatgggacaaatgtggtaaaaacagagatttaaaatccgactgtttcacccgaatagaagtcgcttta |
218 |
Q |
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| T |
40454598 |
gtgagttacggttagacattaaaatagttttggaagggacaaatgtggtaaaaacagagatttaaaatctgactgtttcacccgaatagaagtcgcttta |
40454697 |
T |
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| Q |
219 |
tacaagttatatcttaatacttgtattgaccttgattaagtataagaat |
267 |
Q |
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| T |
40454698 |
tacaagttatatcttaatacttgtattgaccttgattaagtataagaat |
40454746 |
T |
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