View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20559_high_29 (Length: 250)

Name: NF20559_high_29
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20559_high_29
NF20559_high_29
[»] chr4 (4 HSPs)
chr4 (14-250)||(54396561-54396797)
chr4 (14-250)||(23587527-23587763)
chr4 (14-250)||(23596379-23596615)
chr4 (14-86)||(35132750-35132822)
[»] chr7 (15 HSPs)
chr7 (14-139)||(8102916-8103041)
chr7 (14-160)||(39985874-39986020)
chr7 (14-82)||(7877527-7877595)
chr7 (192-241)||(8017385-8017434)
chr7 (14-133)||(8602229-8602348)
chr7 (15-86)||(17260543-17260614)
chr7 (14-132)||(8590894-8591012)
chr7 (21-82)||(8382677-8382738)
chr7 (14-86)||(10494168-10494240)
chr7 (15-58)||(6789842-6789885)
chr7 (15-145)||(8585501-8585631)
chr7 (25-82)||(8636148-8636205)
chr7 (15-55)||(1301797-1301837)
chr7 (14-86)||(3147574-3147646)
chr7 (14-86)||(13333250-13333322)
[»] chr2 (6 HSPs)
chr2 (14-148)||(17716487-17716621)
chr2 (90-223)||(5445621-5445754)
chr2 (14-81)||(12234996-12235063)
chr2 (14-79)||(12245200-12245265)
chr2 (14-58)||(7542556-7542600)
chr2 (14-82)||(16657311-16657379)
[»] chr1 (1 HSPs)
chr1 (21-82)||(4678359-4678420)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 54396797 - 54396561
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396797 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattatt 54396698  T
Q  114 aatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaactt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396697 aatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaactt 54396598  T
Q  214 tcgatgtttctcttcttactattgaagaagggatctt 250  Q
    |||||||||||||||||||||||||||||||||||||    
T  54396597 tcgatgtttctcttcttactattgaagaagggatctt 54396561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 23587527 - 23587763
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattatt 113  Q
    |||||| ||||| ||||| |||||||| ||||| ||||| |||||||||||||| |||||||| ||||  ||||| ||  | ||||||||||| ||||||    
T  23587527 gaatgccgttgtaactgtgcctgcttacttcaacgattcacaacgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaattatt 23587626  T
Q  114 aatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaactt 213  Q
    ||||| ||||| |||||||| |||||||||||| | |||||||||||| | || |  || ||  ||||||| |||||||| ||  | || ||||||||||    
T  23587627 aatgaacctaccgctgctgctattgcttatggtcttgataagaaagctacaagcacgggtgagaagaacgttcttattttcgatcttggtggtggaactt 23587726  T
Q  214 tcgatgtttctcttcttactattgaagaagggatctt 250  Q
    | |||||||| || ||||||||||| ||||| |||||    
T  23587727 ttgatgtttccctacttactattgaggaaggtatctt 23587763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 23596379 - 23596615
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattatt 113  Q
    |||||| ||||| || || ||||| || ||||| ||||| |||||||||||||| || ||||||||||  ||||| ||  | |||||| |||| ||||||    
T  23596379 gaatgccgttgtaaccgtgcctgcatacttcaacgattcacaacgtcaagctactaaggatgctggtgtcatttctggactcaatgtgatgagaattatt 23596478  T
Q  114 aatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaactt 213  Q
    || ||||| |||||||| || |||||||||||| | |||||||||||| | || |  || ||  ||||||| |||||||| ||  | || ||||||||||    
T  23596479 aacgagcccactgctgccgctattgcttatggtcttgataagaaagctacaagtactggtgagaagaacgttcttattttcgatcttggtggtggaactt 23596578  T
Q  214 tcgatgtttctcttcttactattgaagaagggatctt 250  Q
    | |||||||| |||||||||||||| ||||| |||||    
T  23596579 ttgatgtttcacttcttactattgaggaaggtatctt 23596615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 35132822 - 35132750
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 86  Q
    |||||| ||||||||||| ||||||||||| | ||||||||||||  |||| || | ||||||||||||||||    
T  35132822 gaatgcagttgttactgtgcctgcttattttagtgattctcaacgaaaagccactatagatgctggtgctatt 35132750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 8103041 - 8102916
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattatt 113  Q
    |||||| || || ||||| |||||||| |||||||||||||| |||||||| || ||||||||||||| |||  | ||||| ||||| ||||| ||||||    
T  8103041 gaatgccgtcgtcactgtccctgcttacttcaatgattctcagcgtcaagcaactaaagatgctggtgttatcgctggtttaaatgttttgagaattatt 8102942  T
Q  114 aatgagcctactgctgctgcaattgc 139  Q
    |||||||| ||||||||||| |||||    
T  8102941 aatgagccaactgctgctgctattgc 8102916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 39986020 - 39985874
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattatt 113  Q
    |||||||||||||||||| |||||||| || ||||| || || ||||||||||| || |||||||| | |||| | ||| | |||||  || | |||||     
T  39986020 gaatgctgttgttactgtccctgcttactttaatgactcccagcgtcaagctaccaaggatgctggagttattgccggtcttaatgtcatgcgaattatc 39985921  T
Q  114 aatgagcctactgctgctgcaattgcttatggtttggataagaaagc 160  Q
    |||||||| ||||||||||| |||||||||||| | || ||||||||    
T  39985920 aatgagcccactgctgctgccattgcttatggtcttgacaagaaagc 39985874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 7877527 - 7877595
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 82  Q
    |||||| ||||||||||| || |||||||||||||||||||||||  |||| || ||||||||||||||    
T  7877527 gaatgcagttgttactgtgccggcttatttcaatgattctcaacgaaaagccacaaaagatgctggtgc 7877595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 8017385 - 8017434
Alignment:
Q  192 tttgacttgggaggtggaactttcgatgtttctcttcttactattgaaga 241  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||||||||||    
T  8017385 tttgacttgggaggtggtacttttgatgtgtctcttcttactattgaaga 8017434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 8602348 - 8602229
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattatt 113  Q
    |||||| ||||||||||| || |||||||| ||||||||||| ||  |||| || |||||||||||||| ||| | ||| | |||||  || |||| ||     
T  8602348 gaatgcagttgttactgtgccggcttattttaatgattctcagcgaaaagccacaaaagatgctggtgccattgctggtctcaatgtaatgcggataatc 8602249  T
Q  114 aatgagcctactgctgctgc 133  Q
    |||||||| ||||| |||||    
T  8602248 aatgagccaactgcagctgc 8602229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 17260614 - 17260543
Alignment:
Q  15 aatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 86  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||  |||| || | ||||||||||| ||||    
T  17260614 aatgttgttattactgttcctgcttatttcaatgattctcagcgaaaagccaccatagatgctggtgttatt 17260543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 8591012 - 8590894
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattatt 113  Q
    |||||| ||||||||||| || |||||||| |||||||||||  |  ||||||| |||||||||||||  ||| | || ||||||||  || |||| |||    
T  8591012 gaatgcagttgttactgtgccagcttattttaatgattctcagaggaaagctaccaaagatgctggtgtcattgctggcttgaatgtaatgcggataatt 8590913  T
Q  114 aatgagcctactgctgctg 132  Q
    ||||| || ||||| ||||    
T  8590912 aatgaaccaactgccgctg 8590894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 8382677 - 8382738
Alignment:
Q  21 gttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 82  Q
    |||||||| || ||||| ||||||||||||||||||||  |||| || ||||||||||||||    
T  8382677 gttgttaccgtgcctgcatatttcaatgattctcaacggaaagccacaaaagatgctggtgc 8382738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 10494168 - 10494240
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 86  Q
    |||||||||||||||||| || ||||| ||||| |||||||||||  | ||||| |  |||||||||||||||    
T  10494168 gaatgctgttgttactgtgccggcttacttcaacgattctcaacgaaaggctactattgatgctggtgctatt 10494240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 6789885 - 6789842
Alignment:
Q  15 aatgctgttgttactgttcctgcttatttcaatgattctcaacg 58  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||    
T  6789885 aatgcagttattactgtgcctgcttatttcaatgattctcaacg 6789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 8585501 - 8585631
Alignment:
Q  15 aatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattatta 114  Q
    ||||| ||||| ||||| ||||||||||||||||||||||| ||  |||| || |  ||||||||||| ||| | ||  | |||||  ||||||| || |    
T  8585501 aatgcagttgtgactgtgcctgcttatttcaatgattctcagcgaaaagccaccatggatgctggtgccattgctggccttaatgttatgaggataatca 8585600  T
Q  115 atgagcctactgctgctgcaattgcttatgg 145  Q
    |||| || |||||||| || ||||| |||||    
T  8585601 atgaacccactgctgcagctattgcatatgg 8585631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 8636148 - 8636205
Alignment:
Q  25 ttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 82  Q
    ||||||| || |||||||||||||||||||| ||| || | || ||||||||||||||    
T  8636148 ttactgtgcccgcttatttcaatgattctcagcgtaaatccaccaaagatgctggtgc 8636205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 1301837 - 1301797
Alignment:
Q  15 aatgctgttgttactgttcctgcttatttcaatgattctca 55  Q
    ||||||||||||||||| |||||  ||||||||||||||||    
T  1301837 aatgctgttgttactgtgcctgcacatttcaatgattctca 1301797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 3147646 - 3147574
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 86  Q
    |||||| |||||||| || |||||||||||||||||| |||| ||  |||| || | ||||||||||| ||||    
T  3147646 gaatgcagttgttaccgtacctgcttatttcaatgatgctcagcggaaagcgacaatagatgctggtgttatt 3147574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 13333250 - 13333322
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 86  Q
    |||||| ||||||||||| || ||||| |||||||||||||| ||  | || || | ||||||||||||||||    
T  13333250 gaatgccgttgttactgtgccggcttacttcaatgattctcagcgaaaggccaccatagatgctggtgctatt 13333322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 17716487 - 17716621
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattatt 113  Q
    |||||| ||||||||||| |||||||| || |||  ||||||  | |||||||| ||  |||||||||||||| | ||| | ||| |  |||| ||||||    
T  17716487 gaatgccgttgttactgtccctgcttactttaatttttctcagagacaagctactaagcatgctggtgctattgctggtcttaatttcatgagaattatt 17716586  T
Q  114 aatgagcctactgctgctgcaattgcttatggttt 148  Q
    |||||||| |||||||| || ||||||||||||||    
T  17716587 aatgagcccactgctgcagccattgcttatggttt 17716621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 223
Target Start/End: Original strand, 5445621 - 5445754
Alignment:
Q  90 ggtttgaatgtgttgaggattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgctta 189  Q
    ||||| |||||| ||||||| || || ||||||||||| ||||| ||||||||||||||||| ||||||   | |||| |||| ||  |||| ||||||     
T  5445621 ggttttaatgtgatgaggatcatcaacgagcctactgcagctgctattgcttatggtttggacaagaaaatgtggagagaaggtgagaagaatgtgcttg 5445720  T
Q  190 tttttgacttgggaggtggaactttcgatgtttc 223  Q
    | |||||  | || |||||||| |||||||||||    
T  5445721 tgtttgatcttggtggtggaacattcgatgtttc 5445754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 12235063 - 12234996
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtg 81  Q
    |||||| |||||||| || ||||||||||||||||||||||||||  |||| || | |||||||||||    
T  12235063 gaatgcagttgttaccgtgcctgcttatttcaatgattctcaacgaaaagcaactatagatgctggtg 12234996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 12245200 - 12245265
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctgg 79  Q
    |||||||||||||||||| ||||||||||| | ||||||||| ||  |||| |||| |||||||||    
T  12245200 gaatgctgttgttactgtacctgcttattttagtgattctcagcgaaaagcaacgatagatgctgg 12245265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 7542600 - 7542556
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacg 58  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7542600 gaatgcagttgttactgtacctgcttattttaatgattctcaacg 7542556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 16657311 - 16657379
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 82  Q
    |||||||||||||||||| || ||||| ||||||||||| || ||  |||| || | ||||||||||||    
T  16657311 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgc 16657379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 4678359 - 4678420
Alignment:
Q  21 gttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 82  Q
    ||||||||||| ||||| || |||||||||||||||||  ||||||| | ||||||||||||    
T  4678359 gttgttactgtgcctgcatacttcaatgattctcaacgaaaagctaccatagatgctggtgc 4678420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University