View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20559_high_3 (Length: 721)

Name: NF20559_high_3
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20559_high_3
NF20559_high_3
[»] chr8 (1 HSPs)
chr8 (13-703)||(42454088-42454811)


Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 13 - 703
Target Start/End: Complemental strand, 42454811 - 42454088
Alignment:
Q  13 tgaataaccactaataatacaaacaaggtatcttttcttcctagctgaaagcaacattcaaaagaaaactataatacccttaacgacctcttccatcctt 112  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42454811 tgaataaccagtaataatacaaacaaggtatcttttcttcctagctgaaagcaacattcaaaagaaaactataataccctcaacgacctcttccatcctt 42454712  T
Q  113 ggaatttcttgcgtcacaaaattttcaaaacaattgtgtgtcaaataagaattaagcatttccaatgtttcttaccgaaggaagaggatacaaagtaatc 212  Q
    |||||||||||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42454711 ggaatttcttgcgtcacaaatttttcaaag-aattgtgtgtcaaagaagaattaagcatttccaatgtttcttaccgaaggaggaggatacaaagtaatc 42454613  T
Q  213 gaaaagagaaagtatgttctggaaaaaatcaccccattcccacccacttgaaaattgtataccatatatacaacagaagtaaaattgcgattataacaaa 312  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  42454612 gaaaagggaaagtatgttctgggaaaaatcaccccattcccacccacttgaaaattgtataccatatatacaacagaagtaaaattgcgagtataaaaaa 42454513  T
Q  313 gatgaccctctctctccatctannnnnnnccgaacaccaggcacaatccgcggctttccc----accaccactaaggatacc------------------ 390  Q
    |||||||||||| ||| || |        |||||||||| ||||||||||| ||||||||    ||||||||||||||||||                      
T  42454512 gatgaccctctccctctattt-----tttccgaacaccacgcacaatccgcagctttcccaccaaccaccactaaggataccttggaaagggccagtgca 42454418  T
Q  391 ----tttgattgagaagtttctgaaacggtcaattaaaatccaaa---tatttgctaacaatgagcaataagaatatagtagctcaaatcaatattaca- 482  Q
        |||||||||||||||||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  42454417 aaaatttgattgagaagtttctgaaacggtcaattaaaatccaaatagtatttgctaactatgagcaataagaatatagtagctcaaatcaatattacat 42454318  T
Q  483 -----act-----ttgttatggcttcacaggtcacaaccaccattcaaagttcaaacatatgtctctattcccctcaaaagccaaaaaacatgtctccat 572  Q
         |||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42454317 gaatcactactacttgttatggcttcacaggtcacaaccaccattcaaagttcaaacatatgtctctattcccctcaaaagccaaaaaacatgtctcgat 42454218  T
Q  573 gacgattataaaacatctcattaatatgtttacaataatataaactaatgacctttgcatcaacttcaaaagtgcacgtgtaaaaatcaactgccaacat 672  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |    
T  42454217 gacgattataaaacatctcattaatatgtttacaataatataaactaatgacctttgcatcaacttcaaaagtgcacgtgt-aaaatcaactgctaacgt 42454119  T
Q  673 cgtacgcacaggtgcgtgcagcagagcaggg 703  Q
    |||||||||||||||||||||||||||||||    
T  42454118 cgtacgcacaggtgcgtgcagcagagcaggg 42454088  T

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